Gene info for HMPREF1078_RS19925 in Parabacteroides merdae CL09T00C40

Annotation: transposase
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH976527, - strand, nucleotides 616,501 to 617,482
See nucleotide sequence around HMPREF1078_RS19925 or for all of scaffold NZ_JH976527

Nearby Genes

500 ntHMPREF1078_RS12875 and HMPREF1078_RS12880 are separated by 13 nucleotidesHMPREF1078_RS12880 and HMPREF1078_RS12885 are separated by 378 nucleotidesHMPREF1078_RS12885 and HMPREF1078_RS12890 are separated by 94 nucleotidesHMPREF1078_RS12890 and HMPREF1078_RS12895 are separated by 197 nucleotidesHMPREF1078_RS12895 and HMPREF1078_RS19925 are separated by 1743 nucleotidesHMPREF1078_RS19925 and HMPREF1078_RS12905 are separated by 104 nucleotidesHMPREF1078_RS12905 and HMPREF1078_RS18840 are separated by 441 nucleotidesHMPREF1078_RS18840 and HMPREF1078_RS12910 overlap by 4 nucleotidesHMPREF1078_RS12910 and HMPREF1078_RS20070 are separated by 966 nucleotidesHMPREF1078_RS20070 and HMPREF1078_RS12915 are separated by 498 nucleotides HMPREF1078_RS12875: HMPREF1078_RS12875 - LysO family transporter, at 610,707 to 610,985 _RS12875 HMPREF1078_RS12880: HMPREF1078_RS12880 - hypothetical protein, at 610,999 to 611,394 _RS12880 HMPREF1078_RS12885: HMPREF1078_RS12885 - GH92 family glycosyl hydrolase, at 611,773 to 614,034 _RS12885 HMPREF1078_RS12890: HMPREF1078_RS12890 - heavy metal-binding domain-containing protein, at 614,129 to 614,449 _RS12890 HMPREF1078_RS12895: HMPREF1078_RS12895 - 5S ribosomal RNA, at 614,647 to 614,757 _RS12895 HMPREF1078_RS19925: HMPREF1078_RS19925 - transposase, at 616,501 to 617,482 _RS19925 HMPREF1078_RS12905: HMPREF1078_RS12905 - transposase, at 617,587 to 617,961 _RS12905 HMPREF1078_RS18840: HMPREF1078_RS18840 - DUF3990 domain-containing protein, at 618,403 to 618,543 _RS18840 HMPREF1078_RS12910: HMPREF1078_RS12910 - DUF3791 domain-containing protein, at 618,540 to 618,758 _RS12910 HMPREF1078_RS20070: HMPREF1078_RS20070 - hypothetical protein, at 619,725 to 619,841 _RS20070 HMPREF1078_RS12915: HMPREF1078_RS12915 - alpha/beta hydrolase, at 620,340 to 621,221 _RS12915
Locus Name Description Strand Phenotype
HMPREF1078_RS12875 HMPREF1078_RS12875 LysO family transporter - insig.
HMPREF1078_RS12880 HMPREF1078_RS12880 hypothetical protein - insig.
HMPREF1078_RS12885 HMPREF1078_RS12885 GH92 family glycosyl hydrolase + cofit
HMPREF1078_RS12890 HMPREF1078_RS12890 heavy metal-binding domain-containing protein + strong
HMPREF1078_RS12895 HMPREF1078_RS12895 5S ribosomal RNA - no data
HMPREF1078_RS19925 HMPREF1078_RS19925 transposase - insig.
HMPREF1078_RS12905 HMPREF1078_RS12905 transposase - insig.
HMPREF1078_RS18840 HMPREF1078_RS18840 DUF3990 domain-containing protein - insig.
HMPREF1078_RS12910 HMPREF1078_RS12910 DUF3791 domain-containing protein - insig.
HMPREF1078_RS20070 HMPREF1078_RS20070 hypothetical protein + no data
HMPREF1078_RS12915 HMPREF1078_RS12915 alpha/beta hydrolase - insig.

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