Gene info for HMPREF1078_RS18690 in Parabacteroides merdae CL09T00C40

Annotation: site-specific integrase
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH976526, - strand, nucleotides 338,352 to 338,555
See nucleotide sequence around HMPREF1078_RS18690 or for all of scaffold NZ_JH976526

Nearby Genes

500 ntHMPREF1078_RS08735 and HMPREF1078_RS08740 are separated by 223 nucleotidesHMPREF1078_RS08740 and HMPREF1078_RS18680 are separated by 104 nucleotidesHMPREF1078_RS18680 and HMPREF1078_RS08745 are separated by 20 nucleotidesHMPREF1078_RS08745 and HMPREF1078_RS19870 are separated by 180 nucleotidesHMPREF1078_RS19870 and HMPREF1078_RS18690 overlap by 20 nucleotidesHMPREF1078_RS18690 and HMPREF1078_RS08755 are separated by 136 nucleotidesHMPREF1078_RS08755 and HMPREF1078_RS08760 are separated by 28 nucleotidesHMPREF1078_RS08760 and HMPREF1078_RS08765 are separated by 28 nucleotidesHMPREF1078_RS08765 and HMPREF1078_RS19190 are separated by 91 nucleotidesHMPREF1078_RS19190 and HMPREF1078_RS19195 are separated by 30 nucleotides HMPREF1078_RS08735: HMPREF1078_RS08735 - signal peptidase I, at 334,090 to 334,764 _RS08735 HMPREF1078_RS08740: HMPREF1078_RS08740 - 6-bladed beta-propeller, at 334,988 to 336,223 _RS08740 HMPREF1078_RS18680: HMPREF1078_RS18680 - hypothetical protein, at 336,328 to 336,714 _RS18680 HMPREF1078_RS08745: HMPREF1078_RS08745 - hypothetical protein, at 336,735 to 337,955 _RS08745 HMPREF1078_RS19870: HMPREF1078_RS19870 - hypothetical protein, at 338,136 to 338,371 _RS19870 HMPREF1078_RS18690: HMPREF1078_RS18690 - site-specific integrase, at 338,352 to 338,555 _RS18690 HMPREF1078_RS08755: HMPREF1078_RS08755 - tRNA-Lys, at 338,692 to 338,764 _RS08755 HMPREF1078_RS08760: HMPREF1078_RS08760 - tRNA-Lys, at 338,793 to 338,865 _RS08760 HMPREF1078_RS08765: HMPREF1078_RS08765 - tRNA-Lys, at 338,894 to 338,966 _RS08765 HMPREF1078_RS19190: HMPREF1078_RS19190 - MBL fold metallo-hydrolase, at 339,058 to 339,861 _RS19190 HMPREF1078_RS19195: HMPREF1078_RS19195 - type I asparaginase, at 339,892 to 340,962 _RS19195
Locus Name Description Strand Phenotype
HMPREF1078_RS08735 HMPREF1078_RS08735 signal peptidase I - insig.
HMPREF1078_RS08740 HMPREF1078_RS08740 6-bladed beta-propeller - insig.
HMPREF1078_RS18680 HMPREF1078_RS18680 hypothetical protein - insig.
HMPREF1078_RS08745 HMPREF1078_RS08745 hypothetical protein - insig.
HMPREF1078_RS19870 HMPREF1078_RS19870 hypothetical protein - insig.
HMPREF1078_RS18690 HMPREF1078_RS18690 site-specific integrase - insig.
HMPREF1078_RS08755 HMPREF1078_RS08755 tRNA-Lys - insig.
HMPREF1078_RS08760 HMPREF1078_RS08760 tRNA-Lys - insig.
HMPREF1078_RS08765 HMPREF1078_RS08765 tRNA-Lys - no data
HMPREF1078_RS19190 HMPREF1078_RS19190 MBL fold metallo-hydrolase - strong
HMPREF1078_RS19195 HMPREF1078_RS19195 type I asparaginase - insig.

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