Gene info for HMPREF1078_RS18600 in Parabacteroides merdae CL09T00C40

Annotation: helix-turn-helix domain-containing protein
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH976526, - strand, nucleotides 1,269 to 1,581
See nucleotide sequence around HMPREF1078_RS18600 or for all of scaffold NZ_JH976526

Nearby Genes

500 ntHMPREF1078_RS07370 and HMPREF1078_RS07375 are separated by 283 nucleotidesHMPREF1078_RS07375 and HMPREF1078_RS07380 are separated by 53 nucleotidesHMPREF1078_RS07380 and HMPREF1078_RS18600 overlap by 14 nucleotidesHMPREF1078_RS18600 and HMPREF1078_RS19840 are separated by 228 nucleotidesHMPREF1078_RS19840 and HMPREF1078_RS19845 are separated by 60 nucleotidesHMPREF1078_RS19845 and HMPREF1078_RS07390 are separated by 0 nucleotidesHMPREF1078_RS07390 and HMPREF1078_RS07395 are separated by 126 nucleotidesHMPREF1078_RS07395 and HMPREF1078_RS07400 are separated by 351 nucleotides HMPREF1078_RS07370: HMPREF1078_RS07370 - tyrosine-type recombinase/integrase, at 2 to 358 _RS07370 HMPREF1078_RS07375: HMPREF1078_RS07375 - helix-turn-helix domain-containing protein, at 642 to 935 _RS07375 HMPREF1078_RS07380: HMPREF1078_RS07380 - DUF3876 domain-containing protein, at 989 to 1,282 _RS07380 HMPREF1078_RS18600: HMPREF1078_RS18600 - helix-turn-helix domain-containing protein, at 1,269 to 1,581 _RS18600 HMPREF1078_RS19840: HMPREF1078_RS19840 - hypothetical protein, at 1,810 to 2,121 _RS19840 HMPREF1078_RS19845: HMPREF1078_RS19845 - LuxR C-terminal-related transcriptional regulator, at 2,182 to 2,574 _RS19845 HMPREF1078_RS07390: HMPREF1078_RS07390 - phosphoglycerate mutase family protein, at 2,575 to 3,168 _RS07390 HMPREF1078_RS07395: HMPREF1078_RS07395 - '3'-5' exonuclease' pseudo=_no_value transl_table=11, at 3,295 to 5,105 _RS07395 HMPREF1078_RS07400: HMPREF1078_RS07400 - helix-turn-helix domain-containing protein, at 5,457 to 5,993 _RS07400
Locus Name Description Strand Phenotype
HMPREF1078_RS07370 HMPREF1078_RS07370 tyrosine-type recombinase/integrase + insig.
HMPREF1078_RS07375 HMPREF1078_RS07375 helix-turn-helix domain-containing protein - insig.
HMPREF1078_RS07380 HMPREF1078_RS07380 DUF3876 domain-containing protein - insig.
HMPREF1078_RS18600 HMPREF1078_RS18600 helix-turn-helix domain-containing protein - insig.
HMPREF1078_RS19840 HMPREF1078_RS19840 hypothetical protein + insig.
HMPREF1078_RS19845 HMPREF1078_RS19845 LuxR C-terminal-related transcriptional regulator + insig.
HMPREF1078_RS07390 HMPREF1078_RS07390 phosphoglycerate mutase family protein - insig.
HMPREF1078_RS07395 HMPREF1078_RS07395 '3'-5' exonuclease' pseudo=_no_value transl_table=11 + insig.
HMPREF1078_RS07400 HMPREF1078_RS07400 helix-turn-helix domain-containing protein + sig.

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