Gene info for HMPREF1078_RS17300 in Parabacteroides merdae CL09T00C40

Annotation: IS256 family transposase
Type 1: Protein-coding gene
Located on scaffold NZ_JH976531, - strand, nucleotides 2,547 to 3,779
See nucleotide sequence around HMPREF1078_RS17300 or for all of scaffold NZ_JH976531

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS17285 and HMPREF1078_RS17290 overlap by 17 nucleotidesHMPREF1078_RS17290 and HMPREF1078_RS17295 are separated by 75 nucleotidesHMPREF1078_RS17295 and HMPREF1078_RS17300 are separated by 77 nucleotidesHMPREF1078_RS17300 and HMPREF1078_RS17305 are separated by 282 nucleotidesHMPREF1078_RS17305 and HMPREF1078_RS17310 are separated by 155 nucleotidesHMPREF1078_RS17310 and HMPREF1078_RS17315 are separated by 48 nucleotidesHMPREF1078_RS17315 and HMPREF1078_RS17320 are separated by 23 nucleotidesHMPREF1078_RS17320 and HMPREF1078_RS17325 are separated by 37 nucleotides HMPREF1078_RS17285: HMPREF1078_RS17285 - hypothetical protein, at 72 to 428 _RS17285 HMPREF1078_RS17290: HMPREF1078_RS17290 - IS66 family insertion sequence element accessory protein TnpB, at 412 to 780 _RS17290 HMPREF1078_RS17295: HMPREF1078_RS17295 - IS66-like element ISBvu3 family transposase, at 856 to 2,469 _RS17295 HMPREF1078_RS17300: HMPREF1078_RS17300 - IS256 family transposase, at 2,547 to 3,779 _RS17300 HMPREF1078_RS17305: HMPREF1078_RS17305 - hybrid sensor histidine kinase/response regulator transcription factor, at 4,062 to 8,147 _RS17305 HMPREF1078_RS17310: HMPREF1078_RS17310 - right-handed parallel beta-helix repeat-containing protein, at 8,303 to 9,907 _RS17310 HMPREF1078_RS17315: HMPREF1078_RS17315 - RagB/SusD family nutrient uptake outer membrane protein, at 9,956 to 11,647 _RS17315 HMPREF1078_RS17320: HMPREF1078_RS17320 - SusC/RagA family TonB-linked outer membrane protein, at 11,671 to 14,433 _RS17320 HMPREF1078_RS17325: HMPREF1078_RS17325 - RagB/SusD family nutrient uptake outer membrane protein, at 14,471 to 16,300 _RS17325
Locus Name Description Strand Phenotype
HMPREF1078_RS17285 HMPREF1078_RS17285 hypothetical protein + no data
HMPREF1078_RS17290 HMPREF1078_RS17290 IS66 family insertion sequence element accessory protein TnpB + no data
HMPREF1078_RS17295 HMPREF1078_RS17295 IS66-like element ISBvu3 family transposase + no data
HMPREF1078_RS17300 HMPREF1078_RS17300 IS256 family transposase - no data
HMPREF1078_RS17305 HMPREF1078_RS17305 hybrid sensor histidine kinase/response regulator transcription factor - cofit
HMPREF1078_RS17310 HMPREF1078_RS17310 right-handed parallel beta-helix repeat-containing protein - insig.
HMPREF1078_RS17315 HMPREF1078_RS17315 RagB/SusD family nutrient uptake outer membrane protein - cofit
HMPREF1078_RS17320 HMPREF1078_RS17320 SusC/RagA family TonB-linked outer membrane protein - cofit
HMPREF1078_RS17325 HMPREF1078_RS17325 RagB/SusD family nutrient uptake outer membrane protein - cofit

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