Gene info for HMPREF1078_RS17050 in Parabacteroides merdae CL09T00C40

Annotation: ATP-dependent Clp endopeptidase proteolytic subunit ClpP
Type 1: Protein-coding gene
Located on scaffold NZ_JH976530, - strand, nucleotides 119,679 to 120,344
See nucleotide sequence around HMPREF1078_RS17050 or for all of scaffold NZ_JH976530

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS17020 and HMPREF1078_RS17025 are separated by 22 nucleotidesHMPREF1078_RS17025 and HMPREF1078_RS20105 are separated by 15 nucleotidesHMPREF1078_RS20105 and HMPREF1078_RS17040 are separated by 881 nucleotidesHMPREF1078_RS17040 and HMPREF1078_RS17045 are separated by 25 nucleotidesHMPREF1078_RS17045 and HMPREF1078_RS17050 are separated by 97 nucleotidesHMPREF1078_RS17050 and HMPREF1078_RS17055 are separated by 186 nucleotidesHMPREF1078_RS17055 and HMPREF1078_RS17060 are separated by 325 nucleotidesHMPREF1078_RS17060 and HMPREF1078_RS17065 are separated by 69 nucleotidesHMPREF1078_RS17065 and HMPREF1078_RS17070 overlap by 4 nucleotidesHMPREF1078_RS17070 and HMPREF1078_RS17075 are separated by 184 nucleotides HMPREF1078_RS17020: HMPREF1078_RS17020 - peptidylprolyl isomerase, at 111,424 to 112,788 _RS17020 HMPREF1078_RS17025: HMPREF1078_RS17025 - hypothetical protein, at 112,811 to 113,668 _RS17025 HMPREF1078_RS20105: HMPREF1078_RS20105 - peptidylprolyl isomerase, at 113,684 to 115,264 _RS20105 HMPREF1078_RS17040: HMPREF1078_RS17040 - DNA helicase RecQ, at 116,146 to 118,326 _RS17040 HMPREF1078_RS17045: HMPREF1078_RS17045 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 118,352 to 119,581 _RS17045 HMPREF1078_RS17050: HMPREF1078_RS17050 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 119,679 to 120,344 _RS17050 HMPREF1078_RS17055: HMPREF1078_RS17055 - trigger factor, at 120,531 to 121,886 _RS17055 HMPREF1078_RS17060: HMPREF1078_RS17060 - RNA-binding protein, at 122,212 to 122,454 _RS17060 HMPREF1078_RS17065: HMPREF1078_RS17065 - CPBP family intramembrane metalloprotease, at 122,524 to 123,429 _RS17065 HMPREF1078_RS17070: HMPREF1078_RS17070 - LPS export ABC transporter ATP-binding protein, at 123,426 to 124,178 _RS17070 HMPREF1078_RS17075: HMPREF1078_RS17075 - ABC transporter permease, at 124,363 to 125,109 _RS17075
Locus Name Description Strand Phenotype
HMPREF1078_RS17020 HMPREF1078_RS17020 peptidylprolyl isomerase - no data
HMPREF1078_RS17025 HMPREF1078_RS17025 hypothetical protein - strong
HMPREF1078_RS20105 HMPREF1078_RS20105 peptidylprolyl isomerase - strong
HMPREF1078_RS17040 HMPREF1078_RS17040 DNA helicase RecQ - cofit
HMPREF1078_RS17045 HMPREF1078_RS17045 ATP-dependent Clp protease ATP-binding subunit ClpX - insig.
HMPREF1078_RS17050 HMPREF1078_RS17050 ATP-dependent Clp endopeptidase proteolytic subunit ClpP - strong
HMPREF1078_RS17055 HMPREF1078_RS17055 trigger factor - cofit
HMPREF1078_RS17060 HMPREF1078_RS17060 RNA-binding protein + insig.
HMPREF1078_RS17065 HMPREF1078_RS17065 CPBP family intramembrane metalloprotease + strong
HMPREF1078_RS17070 HMPREF1078_RS17070 LPS export ABC transporter ATP-binding protein - no data
HMPREF1078_RS17075 HMPREF1078_RS17075 ABC transporter permease + strong

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