Gene info for HMPREF1078_RS16420 in Parabacteroides merdae CL09T00C40

Annotation: RNA polymerase sigma factor RpoD/SigA
Type 1: Protein-coding gene
Located on scaffold NZ_JH976529, + strand, nucleotides 424,502 to 425,362
See nucleotide sequence around HMPREF1078_RS16420 or for all of scaffold NZ_JH976529

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS16395 and HMPREF1078_RS16400 overlap by 4 nucleotidesHMPREF1078_RS16400 and HMPREF1078_RS16405 are separated by 37 nucleotidesHMPREF1078_RS16405 and HMPREF1078_RS16410 are separated by 35 nucleotidesHMPREF1078_RS16410 and HMPREF1078_RS16415 are separated by 871 nucleotidesHMPREF1078_RS16415 and HMPREF1078_RS16420 are separated by 143 nucleotidesHMPREF1078_RS16420 and HMPREF1078_RS16425 are separated by 531 nucleotidesHMPREF1078_RS16425 and HMPREF1078_RS16430 are separated by 155 nucleotidesHMPREF1078_RS16430 and HMPREF1078_RS16435 are separated by 10 nucleotidesHMPREF1078_RS16435 and HMPREF1078_RS16440 are separated by 149 nucleotides HMPREF1078_RS16395: HMPREF1078_RS16395 - riboflavin synthase, at 417,984 to 418,586 _RS16395 HMPREF1078_RS16400: HMPREF1078_RS16400 - nitroreductase family protein, at 418,583 to 419,128 _RS16400 HMPREF1078_RS16405: HMPREF1078_RS16405 - MATE family efflux transporter, at 419,166 to 420,521 _RS16405 HMPREF1078_RS16410: HMPREF1078_RS16410 - YihY/virulence factor BrkB family protein, at 420,557 to 421,915 _RS16410 HMPREF1078_RS16415: HMPREF1078_RS16415 - Do family serine endopeptidase, at 422,787 to 424,358 _RS16415 HMPREF1078_RS16420: HMPREF1078_RS16420 - RNA polymerase sigma factor RpoD/SigA, at 424,502 to 425,362 _RS16420 HMPREF1078_RS16425: HMPREF1078_RS16425 - 16S ribosomal RNA, at 425,894 to 427,424 _RS16425 HMPREF1078_RS16430: HMPREF1078_RS16430 - tRNA-Ile, at 427,580 to 427,656 _RS16430 HMPREF1078_RS16435: HMPREF1078_RS16435 - tRNA-Ala, at 427,667 to 427,740 _RS16435 HMPREF1078_RS16440: HMPREF1078_RS16440 - 23S ribosomal RNA, at 427,890 to 430,765 _RS16440
Locus Name Description Strand Phenotype
HMPREF1078_RS16395 HMPREF1078_RS16395 riboflavin synthase + no data
HMPREF1078_RS16400 HMPREF1078_RS16400 nitroreductase family protein + strong
HMPREF1078_RS16405 HMPREF1078_RS16405 MATE family efflux transporter - insig.
HMPREF1078_RS16410 HMPREF1078_RS16410 YihY/virulence factor BrkB family protein - strong
HMPREF1078_RS16415 HMPREF1078_RS16415 Do family serine endopeptidase + insig.
HMPREF1078_RS16420 HMPREF1078_RS16420 RNA polymerase sigma factor RpoD/SigA + no data
HMPREF1078_RS16425 HMPREF1078_RS16425 16S ribosomal RNA + no data
HMPREF1078_RS16430 HMPREF1078_RS16430 tRNA-Ile + no data
HMPREF1078_RS16435 HMPREF1078_RS16435 tRNA-Ala + no data
HMPREF1078_RS16440 HMPREF1078_RS16440 23S ribosomal RNA + no data

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