Gene info for HMPREF1078_RS16105 in Parabacteroides merdae CL09T00C40

Annotation: sigma-70 family RNA polymerase sigma factor
Type 1: Protein-coding gene
Located on scaffold NZ_JH976529, + strand, nucleotides 345,947 to 346,441
See nucleotide sequence around HMPREF1078_RS16105 or for all of scaffold NZ_JH976529

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS16080 and HMPREF1078_RS16085 are separated by 127 nucleotidesHMPREF1078_RS16085 and HMPREF1078_RS16090 are separated by 57 nucleotidesHMPREF1078_RS16090 and HMPREF1078_RS16095 are separated by 44 nucleotidesHMPREF1078_RS16095 and HMPREF1078_RS16100 are separated by 17 nucleotidesHMPREF1078_RS16100 and HMPREF1078_RS16105 are separated by 174 nucleotidesHMPREF1078_RS16105 and HMPREF1078_RS16110 are separated by 17 nucleotidesHMPREF1078_RS16110 and HMPREF1078_RS16115 are separated by 12 nucleotidesHMPREF1078_RS16115 and HMPREF1078_RS16120 are separated by 20 nucleotidesHMPREF1078_RS16120 and HMPREF1078_RS16125 are separated by 516 nucleotidesHMPREF1078_RS16125 and HMPREF1078_RS16130 are separated by 162 nucleotides HMPREF1078_RS16080: HMPREF1078_RS16080 - TrkA C-terminal domain-containing protein, at 341,148 to 342,746 _RS16080 HMPREF1078_RS16085: HMPREF1078_RS16085 - tRNA pseudouridine(38-40) synthase TruA, at 342,874 to 343,638 _RS16085 HMPREF1078_RS16090: HMPREF1078_RS16090 - DMT family transporter, at 343,696 to 344,592 _RS16090 HMPREF1078_RS16095: HMPREF1078_RS16095 - DUF3256 family protein, at 344,637 to 345,269 _RS16095 HMPREF1078_RS16100: HMPREF1078_RS16100 - PepSY-like domain-containing protein, at 345,287 to 345,772 _RS16100 HMPREF1078_RS16105: HMPREF1078_RS16105 - sigma-70 family RNA polymerase sigma factor, at 345,947 to 346,441 _RS16105 HMPREF1078_RS16110: HMPREF1078_RS16110 - hypothetical protein, at 346,459 to 347,004 _RS16110 HMPREF1078_RS16115: HMPREF1078_RS16115 - hypothetical protein, at 347,017 to 347,481 _RS16115 HMPREF1078_RS16120: HMPREF1078_RS16120 - outer membrane beta-barrel protein, at 347,502 to 348,413 _RS16120 HMPREF1078_RS16125: HMPREF1078_RS16125 - hypothetical protein, at 348,930 to 349,118 _RS16125 HMPREF1078_RS16130: HMPREF1078_RS16130 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 349,281 to 350,804 _RS16130
Locus Name Description Strand Phenotype
HMPREF1078_RS16080 HMPREF1078_RS16080 TrkA C-terminal domain-containing protein - strong
HMPREF1078_RS16085 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA + sig.
HMPREF1078_RS16090 HMPREF1078_RS16090 DMT family transporter + insig.
HMPREF1078_RS16095 HMPREF1078_RS16095 DUF3256 family protein + strong
HMPREF1078_RS16100 HMPREF1078_RS16100 PepSY-like domain-containing protein - insig.
HMPREF1078_RS16105 HMPREF1078_RS16105 sigma-70 family RNA polymerase sigma factor + insig.
HMPREF1078_RS16110 HMPREF1078_RS16110 hypothetical protein + strong
HMPREF1078_RS16115 HMPREF1078_RS16115 hypothetical protein + strong
HMPREF1078_RS16120 HMPREF1078_RS16120 outer membrane beta-barrel protein + insig.
HMPREF1078_RS16125 HMPREF1078_RS16125 hypothetical protein + insig.
HMPREF1078_RS16130 HMPREF1078_RS16130 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase + strong

Or browse nearby genes

Or see the comparative fitness browser