Gene info for HMPREF1078_RS15380 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976529, + strand, nucleotides 169,663 to 171,249
See nucleotide sequence around HMPREF1078_RS15380 or for all of scaffold NZ_JH976529

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS15355 and HMPREF1078_RS15360 are separated by 29 nucleotidesHMPREF1078_RS15360 and HMPREF1078_RS15365 are separated by 29 nucleotidesHMPREF1078_RS15365 and HMPREF1078_RS15370 are separated by 1176 nucleotidesHMPREF1078_RS15370 and HMPREF1078_RS15375 are separated by 467 nucleotidesHMPREF1078_RS15375 and HMPREF1078_RS15380 are separated by 21 nucleotidesHMPREF1078_RS15380 and HMPREF1078_RS15385 are separated by 214 nucleotidesHMPREF1078_RS15385 and HMPREF1078_RS15390 are separated by 85 nucleotidesHMPREF1078_RS15390 and HMPREF1078_RS15395 are separated by 312 nucleotidesHMPREF1078_RS15395 and HMPREF1078_RS15400 are separated by 182 nucleotidesHMPREF1078_RS15400 and HMPREF1078_RS15405 are separated by 2 nucleotides HMPREF1078_RS15355: HMPREF1078_RS15355 - hypothetical protein, at 159,367 to 160,239 _RS15355 HMPREF1078_RS15360: HMPREF1078_RS15360 - RagB/SusD family nutrient uptake outer membrane protein, at 160,269 to 161,807 _RS15360 HMPREF1078_RS15365: HMPREF1078_RS15365 - TonB-dependent receptor, at 161,837 to 164,758 _RS15365 HMPREF1078_RS15370: HMPREF1078_RS15370 - carboxypeptidase-like regulatory domain-containing protein, at 165,935 to 166,222 _RS15370 HMPREF1078_RS15375: HMPREF1078_RS15375 - SusC/RagA family TonB-linked outer membrane protein, at 166,690 to 169,641 _RS15375 HMPREF1078_RS15380: HMPREF1078_RS15380 - RagB/SusD family nutrient uptake outer membrane protein, at 169,663 to 171,249 _RS15380 HMPREF1078_RS15385: HMPREF1078_RS15385 - site-specific integrase, at 171,464 to 172,633 _RS15385 HMPREF1078_RS15390: HMPREF1078_RS15390 - IS1182 family transposase, at 172,719 to 174,374 _RS15390 HMPREF1078_RS15395: HMPREF1078_RS15395 - replication-associated recombination protein A, at 174,687 to 175,967 _RS15395 HMPREF1078_RS15400: HMPREF1078_RS15400 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 176,150 to 177,217 _RS15400 HMPREF1078_RS15405: HMPREF1078_RS15405 - NAD(P)-dependent oxidoreductase, at 177,220 to 178,143 _RS15405
Locus Name Description Strand Phenotype
HMPREF1078_RS15355 HMPREF1078_RS15355 hypothetical protein - sig.
HMPREF1078_RS15360 HMPREF1078_RS15360 RagB/SusD family nutrient uptake outer membrane protein - cofit
HMPREF1078_RS15365 HMPREF1078_RS15365 TonB-dependent receptor - cofit
HMPREF1078_RS15370 HMPREF1078_RS15370 carboxypeptidase-like regulatory domain-containing protein + strong
HMPREF1078_RS15375 HMPREF1078_RS15375 SusC/RagA family TonB-linked outer membrane protein + cofit
HMPREF1078_RS15380 HMPREF1078_RS15380 RagB/SusD family nutrient uptake outer membrane protein + cofit
HMPREF1078_RS15385 HMPREF1078_RS15385 site-specific integrase + strong
HMPREF1078_RS15390 HMPREF1078_RS15390 IS1182 family transposase - insig.
HMPREF1078_RS15395 HMPREF1078_RS15395 replication-associated recombination protein A + sig.
HMPREF1078_RS15400 HMPREF1078_RS15400 3-phosphoserine/phosphohydroxythreonine transaminase + strong
HMPREF1078_RS15405 HMPREF1078_RS15405 NAD(P)-dependent oxidoreductase + strong

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