Gene info for HMPREF1078_RS13920 in Parabacteroides merdae CL09T00C40

Annotation: tRNA 2-thiocytidine biosynthesis TtcA family protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976528, + strand, nucleotides 242,257 to 243,012
See nucleotide sequence around HMPREF1078_RS13920 or for all of scaffold NZ_JH976528

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS13895 and HMPREF1078_RS13900 are separated by 80 nucleotidesHMPREF1078_RS13900 and HMPREF1078_RS13905 are separated by 92 nucleotidesHMPREF1078_RS13905 and HMPREF1078_RS13910 are separated by 38 nucleotidesHMPREF1078_RS13910 and HMPREF1078_RS13915 are separated by 11 nucleotidesHMPREF1078_RS13915 and HMPREF1078_RS13920 are separated by 150 nucleotidesHMPREF1078_RS13920 and HMPREF1078_RS13925 are separated by 8 nucleotidesHMPREF1078_RS13925 and HMPREF1078_RS13930 are separated by 79 nucleotidesHMPREF1078_RS13930 and HMPREF1078_RS13935 are separated by 3 nucleotidesHMPREF1078_RS13935 and HMPREF1078_RS13940 are separated by 131 nucleotidesHMPREF1078_RS13940 and HMPREF1078_RS13945 are separated by 96 nucleotides HMPREF1078_RS13895: HMPREF1078_RS13895 - nitroreductase family protein, at 237,377 to 238,117 _RS13895 HMPREF1078_RS13900: HMPREF1078_RS13900 - nucleoside phosphorylase, at 238,198 to 239,061 _RS13900 HMPREF1078_RS13905: HMPREF1078_RS13905 - flotillin-like protein FloA, at 239,154 to 240,146 _RS13905 HMPREF1078_RS13910: HMPREF1078_RS13910 - NfeD family protein, at 240,185 to 240,655 _RS13910 HMPREF1078_RS13915: HMPREF1078_RS13915 - tetratricopeptide repeat protein, at 240,667 to 242,106 _RS13915 HMPREF1078_RS13920: HMPREF1078_RS13920 - tRNA 2-thiocytidine biosynthesis TtcA family protein, at 242,257 to 243,012 _RS13920 HMPREF1078_RS13925: HMPREF1078_RS13925 - DMT family protein, at 243,021 to 243,392 _RS13925 HMPREF1078_RS13930: HMPREF1078_RS13930 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 243,472 to 244,380 _RS13930 HMPREF1078_RS13935: HMPREF1078_RS13935 - hypothetical protein, at 244,384 to 244,944 _RS13935 HMPREF1078_RS13940: HMPREF1078_RS13940 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 245,076 to 245,861 _RS13940 HMPREF1078_RS13945: HMPREF1078_RS13945 - bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase, at 245,958 to 247,343 _RS13945
Locus Name Description Strand Phenotype
HMPREF1078_RS13895 HMPREF1078_RS13895 nitroreductase family protein + cofit
HMPREF1078_RS13900 HMPREF1078_RS13900 nucleoside phosphorylase - insig.
HMPREF1078_RS13905 HMPREF1078_RS13905 flotillin-like protein FloA - insig.
HMPREF1078_RS13910 HMPREF1078_RS13910 NfeD family protein - insig.
HMPREF1078_RS13915 HMPREF1078_RS13915 tetratricopeptide repeat protein - strong
HMPREF1078_RS13920 HMPREF1078_RS13920 tRNA 2-thiocytidine biosynthesis TtcA family protein + insig.
HMPREF1078_RS13925 HMPREF1078_RS13925 DMT family protein + sig.
HMPREF1078_RS13930 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA - strong
HMPREF1078_RS13935 HMPREF1078_RS13935 hypothetical protein - strong
HMPREF1078_RS13940 HMPREF1078_RS13940 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase - no data
HMPREF1078_RS13945 HMPREF1078_RS13945 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase - no data

Or browse nearby genes

Or see the comparative fitness browser