Gene info for HMPREF1078_RS13855 in Parabacteroides merdae CL09T00C40

Annotation: restriction endonuclease
Type 1: Protein-coding gene
Located on scaffold NZ_JH976528, + strand, nucleotides 228,553 to 229,488
See nucleotide sequence around HMPREF1078_RS13855 or for all of scaffold NZ_JH976528

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS13830 and HMPREF1078_RS13835 overlap by 11 nucleotidesHMPREF1078_RS13835 and HMPREF1078_RS13840 are separated by 166 nucleotidesHMPREF1078_RS13840 and HMPREF1078_RS13845 are separated by 83 nucleotidesHMPREF1078_RS13845 and HMPREF1078_RS13850 are separated by 11 nucleotidesHMPREF1078_RS13850 and HMPREF1078_RS13855 are separated by 235 nucleotidesHMPREF1078_RS13855 and HMPREF1078_RS13860 overlap by 31 nucleotidesHMPREF1078_RS13860 and HMPREF1078_RS13865 are separated by 286 nucleotidesHMPREF1078_RS13865 and HMPREF1078_RS13870 are separated by 82 nucleotidesHMPREF1078_RS13870 and HMPREF1078_RS13875 are separated by 92 nucleotidesHMPREF1078_RS13875 and HMPREF1078_RS13880 are separated by 270 nucleotides HMPREF1078_RS13830: HMPREF1078_RS13830 - relaxase/mobilization nuclease domain-containing protein, at 224,037 to 224,975 _RS13830 HMPREF1078_RS13835: HMPREF1078_RS13835 - MobC family plasmid mobilization relaxosome protein, at 224,965 to 225,273 _RS13835 HMPREF1078_RS13840: HMPREF1078_RS13840 - DUF6371 domain-containing protein, at 225,440 to 226,486 _RS13840 HMPREF1078_RS13845: HMPREF1078_RS13845 - DUF3987 domain-containing protein, at 226,570 to 227,937 _RS13845 HMPREF1078_RS13850: HMPREF1078_RS13850 - helix-turn-helix domain-containing protein, at 227,949 to 228,317 _RS13850 HMPREF1078_RS13855: HMPREF1078_RS13855 - restriction endonuclease, at 228,553 to 229,488 _RS13855 HMPREF1078_RS13860: HMPREF1078_RS13860 - hypothetical protein, at 229,458 to 230,264 _RS13860 HMPREF1078_RS13865: HMPREF1078_RS13865 - GNAT family N-acetyltransferase, at 230,551 to 231,069 _RS13865 HMPREF1078_RS13870: HMPREF1078_RS13870 - site-specific integrase, at 231,152 to 232,258 _RS13870 HMPREF1078_RS13875: HMPREF1078_RS13875 - helix-turn-helix domain-containing protein, at 232,351 to 233,262 _RS13875 HMPREF1078_RS13880: HMPREF1078_RS13880 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 233,533 to 234,915 _RS13880
Locus Name Description Strand Phenotype
HMPREF1078_RS13830 HMPREF1078_RS13830 relaxase/mobilization nuclease domain-containing protein - insig.
HMPREF1078_RS13835 HMPREF1078_RS13835 MobC family plasmid mobilization relaxosome protein - insig.
HMPREF1078_RS13840 HMPREF1078_RS13840 DUF6371 domain-containing protein - insig.
HMPREF1078_RS13845 HMPREF1078_RS13845 DUF3987 domain-containing protein - insig.
HMPREF1078_RS13850 HMPREF1078_RS13850 helix-turn-helix domain-containing protein - insig.
HMPREF1078_RS13855 HMPREF1078_RS13855 restriction endonuclease + insig.
HMPREF1078_RS13860 HMPREF1078_RS13860 hypothetical protein - insig.
HMPREF1078_RS13865 HMPREF1078_RS13865 GNAT family N-acetyltransferase - insig.
HMPREF1078_RS13870 HMPREF1078_RS13870 site-specific integrase - insig.
HMPREF1078_RS13875 HMPREF1078_RS13875 helix-turn-helix domain-containing protein - insig.
HMPREF1078_RS13880 HMPREF1078_RS13880 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE - cofit

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