Gene info for HMPREF1078_RS13460 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976528, - strand, nucleotides 135,430 to 137,364
See nucleotide sequence around HMPREF1078_RS13460 or for all of scaffold NZ_JH976528

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS13435 and HMPREF1078_RS13440 are separated by 216 nucleotidesHMPREF1078_RS13440 and HMPREF1078_RS13445 are separated by 32 nucleotidesHMPREF1078_RS13445 and HMPREF1078_RS13450 are separated by 274 nucleotidesHMPREF1078_RS13450 and HMPREF1078_RS13455 are separated by 39 nucleotidesHMPREF1078_RS13455 and HMPREF1078_RS13460 are separated by 444 nucleotidesHMPREF1078_RS13460 and HMPREF1078_RS13465 are separated by 12 nucleotidesHMPREF1078_RS13465 and HMPREF1078_RS13470 are separated by 395 nucleotidesHMPREF1078_RS13470 and HMPREF1078_RS13475 are separated by 8 nucleotidesHMPREF1078_RS13475 and HMPREF1078_RS13480 are separated by 175 nucleotidesHMPREF1078_RS13480 and HMPREF1078_RS13485 are separated by 33 nucleotides HMPREF1078_RS13435: HMPREF1078_RS13435 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 126,106 to 127,686 _RS13435 HMPREF1078_RS13440: HMPREF1078_RS13440 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 127,903 to 131,001 _RS13440 HMPREF1078_RS13445: HMPREF1078_RS13445 - Gfo/Idh/MocA family oxidoreductase, at 131,034 to 132,200 _RS13445 HMPREF1078_RS13450: HMPREF1078_RS13450 - BT4734/BF3469 family protein, at 132,475 to 134,562 _RS13450 HMPREF1078_RS13455: HMPREF1078_RS13455 - DsbA family protein, at 134,602 to 134,985 _RS13455 HMPREF1078_RS13460: HMPREF1078_RS13460 - RagB/SusD family nutrient uptake outer membrane protein, at 135,430 to 137,364 _RS13460 HMPREF1078_RS13465: HMPREF1078_RS13465 - TonB-dependent receptor, at 137,377 to 140,400 _RS13465 HMPREF1078_RS13470: HMPREF1078_RS13470 - helix-turn-helix transcriptional regulator, at 140,796 to 141,131 _RS13470 HMPREF1078_RS13475: HMPREF1078_RS13475 - tRNA-Trp, at 141,140 to 141,215 _RS13475 HMPREF1078_RS13480: HMPREF1078_RS13480 - glutamine synthetase family protein, at 141,391 to 142,893 _RS13480 HMPREF1078_RS13485: HMPREF1078_RS13485 - uracil-DNA glycosylase family protein, at 142,927 to 143,520 _RS13485
Locus Name Description Strand Phenotype
HMPREF1078_RS13435 HMPREF1078_RS13435 SUMF1/EgtB/PvdO family nonheme iron enzyme - strong
HMPREF1078_RS13440 HMPREF1078_RS13440 glycoside hydrolase family 2 TIM barrel-domain containing protein - insig.
HMPREF1078_RS13445 HMPREF1078_RS13445 Gfo/Idh/MocA family oxidoreductase - insig.
HMPREF1078_RS13450 HMPREF1078_RS13450 BT4734/BF3469 family protein - insig.
HMPREF1078_RS13455 HMPREF1078_RS13455 DsbA family protein - sig.
HMPREF1078_RS13460 HMPREF1078_RS13460 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS13465 HMPREF1078_RS13465 TonB-dependent receptor - insig.
HMPREF1078_RS13470 HMPREF1078_RS13470 helix-turn-helix transcriptional regulator + insig.
HMPREF1078_RS13475 HMPREF1078_RS13475 tRNA-Trp - no data
HMPREF1078_RS13480 HMPREF1078_RS13480 glutamine synthetase family protein + cofit
HMPREF1078_RS13485 HMPREF1078_RS13485 uracil-DNA glycosylase family protein - insig.

Or browse nearby genes

Or see the comparative fitness browser