Gene info for HMPREF1078_RS13190 in Parabacteroides merdae CL09T00C40

Annotation: RluA family pseudouridine synthase
Type 1: Protein-coding gene
Located on scaffold NZ_JH976528, - strand, nucleotides 64,138 to 65,049
See nucleotide sequence around HMPREF1078_RS13190 or for all of scaffold NZ_JH976528

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS13165 and HMPREF1078_RS13170 are separated by 46 nucleotidesHMPREF1078_RS13170 and HMPREF1078_RS13175 are separated by 48 nucleotidesHMPREF1078_RS13175 and HMPREF1078_RS13180 are separated by 94 nucleotidesHMPREF1078_RS13180 and HMPREF1078_RS13185 are separated by 121 nucleotidesHMPREF1078_RS13185 and HMPREF1078_RS13190 are separated by 19 nucleotidesHMPREF1078_RS13190 and HMPREF1078_RS19945 are separated by 252 nucleotidesHMPREF1078_RS19945 and HMPREF1078_RS13195 are separated by 169 nucleotidesHMPREF1078_RS13195 and HMPREF1078_RS13200 are separated by 6 nucleotidesHMPREF1078_RS13200 and HMPREF1078_RS13205 are separated by 482 nucleotidesHMPREF1078_RS13205 and HMPREF1078_RS13210 overlap by 4 nucleotides HMPREF1078_RS13165: HMPREF1078_RS13165 - RNA polymerase sigma factor, at 59,517 to 60,068 _RS13165 HMPREF1078_RS13170: HMPREF1078_RS13170 - hypothetical protein, at 60,115 to 60,504 _RS13170 HMPREF1078_RS13175: HMPREF1078_RS13175 - hypothetical protein, at 60,553 to 61,023 _RS13175 HMPREF1078_RS13180: HMPREF1078_RS13180 - nucleoside triphosphate pyrophosphohydrolase, at 61,118 to 61,903 _RS13180 HMPREF1078_RS13185: HMPREF1078_RS13185 - cytochrome c biogenesis protein CcdA, at 62,025 to 64,118 _RS13185 HMPREF1078_RS13190: HMPREF1078_RS13190 - RluA family pseudouridine synthase, at 64,138 to 65,049 _RS13190 HMPREF1078_RS19945: HMPREF1078_RS19945 - IS5/IS1182 family transposase, at 65,302 to 65,385 _RS19945 HMPREF1078_RS13195: HMPREF1078_RS13195 - TlpA disulfide reductase family protein, at 65,555 to 67,006 _RS13195 HMPREF1078_RS13200: HMPREF1078_RS13200 - hypothetical protein, at 67,013 to 69,613 _RS13200 HMPREF1078_RS13205: HMPREF1078_RS13205 - IS3 family transposase, at 70,096 to 71,004 _RS13205 HMPREF1078_RS13210: HMPREF1078_RS13210 - hypothetical protein, at 71,001 to 71,429 _RS13210
Locus Name Description Strand Phenotype
HMPREF1078_RS13165 HMPREF1078_RS13165 RNA polymerase sigma factor + insig.
HMPREF1078_RS13170 HMPREF1078_RS13170 hypothetical protein + cofit
HMPREF1078_RS13175 HMPREF1078_RS13175 hypothetical protein + insig.
HMPREF1078_RS13180 HMPREF1078_RS13180 nucleoside triphosphate pyrophosphohydrolase - insig.
HMPREF1078_RS13185 HMPREF1078_RS13185 cytochrome c biogenesis protein CcdA - strong
HMPREF1078_RS13190 HMPREF1078_RS13190 RluA family pseudouridine synthase - insig.
HMPREF1078_RS19945 HMPREF1078_RS19945 IS5/IS1182 family transposase - no data
HMPREF1078_RS13195 HMPREF1078_RS13195 TlpA disulfide reductase family protein + insig.
HMPREF1078_RS13200 HMPREF1078_RS13200 hypothetical protein + insig.
HMPREF1078_RS13205 HMPREF1078_RS13205 IS3 family transposase - no data
HMPREF1078_RS13210 HMPREF1078_RS13210 hypothetical protein - no data

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