Gene info for HMPREF1078_RS13165 in Parabacteroides merdae CL09T00C40

Annotation: RNA polymerase sigma factor
Type 1: Protein-coding gene
Located on scaffold NZ_JH976528, + strand, nucleotides 59,517 to 60,068
See nucleotide sequence around HMPREF1078_RS13165 or for all of scaffold NZ_JH976528

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS13140 and HMPREF1078_RS13145 are separated by 47 nucleotidesHMPREF1078_RS13145 and HMPREF1078_RS13150 are separated by 279 nucleotidesHMPREF1078_RS13150 and HMPREF1078_RS13155 are separated by 72 nucleotidesHMPREF1078_RS13155 and HMPREF1078_RS13160 are separated by 158 nucleotidesHMPREF1078_RS13160 and HMPREF1078_RS13165 are separated by 155 nucleotidesHMPREF1078_RS13165 and HMPREF1078_RS13170 are separated by 46 nucleotidesHMPREF1078_RS13170 and HMPREF1078_RS13175 are separated by 48 nucleotidesHMPREF1078_RS13175 and HMPREF1078_RS13180 are separated by 94 nucleotidesHMPREF1078_RS13180 and HMPREF1078_RS13185 are separated by 121 nucleotidesHMPREF1078_RS13185 and HMPREF1078_RS13190 are separated by 19 nucleotides HMPREF1078_RS13140: HMPREF1078_RS13140 - zinc metallopeptidase, at 54,773 to 55,459 _RS13140 HMPREF1078_RS13145: HMPREF1078_RS13145 - histidine--tRNA ligase, at 55,507 to 56,862 _RS13145 HMPREF1078_RS13150: HMPREF1078_RS13150 - co-chaperone GroES, at 57,142 to 57,411 _RS13150 HMPREF1078_RS13155: HMPREF1078_RS13155 - chaperonin GroEL, at 57,484 to 59,121 _RS13155 HMPREF1078_RS13160: HMPREF1078_RS13160 - tRNA-Leu, at 59,280 to 59,361 _RS13160 HMPREF1078_RS13165: HMPREF1078_RS13165 - RNA polymerase sigma factor, at 59,517 to 60,068 _RS13165 HMPREF1078_RS13170: HMPREF1078_RS13170 - hypothetical protein, at 60,115 to 60,504 _RS13170 HMPREF1078_RS13175: HMPREF1078_RS13175 - hypothetical protein, at 60,553 to 61,023 _RS13175 HMPREF1078_RS13180: HMPREF1078_RS13180 - nucleoside triphosphate pyrophosphohydrolase, at 61,118 to 61,903 _RS13180 HMPREF1078_RS13185: HMPREF1078_RS13185 - cytochrome c biogenesis protein CcdA, at 62,025 to 64,118 _RS13185 HMPREF1078_RS13190: HMPREF1078_RS13190 - RluA family pseudouridine synthase, at 64,138 to 65,049 _RS13190
Locus Name Description Strand Phenotype
HMPREF1078_RS13140 HMPREF1078_RS13140 zinc metallopeptidase + sig.
HMPREF1078_RS13145 HMPREF1078_RS13145 histidine--tRNA ligase + no data
HMPREF1078_RS13150 HMPREF1078_RS13150 co-chaperone GroES + no data
HMPREF1078_RS13155 HMPREF1078_RS13155 chaperonin GroEL + no data
HMPREF1078_RS13160 HMPREF1078_RS13160 tRNA-Leu + no data
HMPREF1078_RS13165 HMPREF1078_RS13165 RNA polymerase sigma factor + insig.
HMPREF1078_RS13170 HMPREF1078_RS13170 hypothetical protein + sig.
HMPREF1078_RS13175 HMPREF1078_RS13175 hypothetical protein + insig.
HMPREF1078_RS13180 HMPREF1078_RS13180 nucleoside triphosphate pyrophosphohydrolase - insig.
HMPREF1078_RS13185 HMPREF1078_RS13185 cytochrome c biogenesis protein CcdA - strong
HMPREF1078_RS13190 HMPREF1078_RS13190 RluA family pseudouridine synthase - insig.

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