Gene info for HMPREF1078_RS13085 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976528, + strand, nucleotides 42,266 to 44,131
See nucleotide sequence around HMPREF1078_RS13085 or for all of scaffold NZ_JH976528

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS13060 and HMPREF1078_RS13065 are separated by 172 nucleotidesHMPREF1078_RS13065 and HMPREF1078_RS13070 are separated by 20 nucleotidesHMPREF1078_RS13070 and HMPREF1078_RS13075 are separated by 104 nucleotidesHMPREF1078_RS13075 and HMPREF1078_RS13080 are separated by 738 nucleotidesHMPREF1078_RS13080 and HMPREF1078_RS13085 are separated by 30 nucleotidesHMPREF1078_RS13085 and HMPREF1078_RS13090 are separated by 95 nucleotidesHMPREF1078_RS13090 and HMPREF1078_RS13095 are separated by 263 nucleotidesHMPREF1078_RS13095 and HMPREF1078_RS13100 are separated by 3 nucleotidesHMPREF1078_RS13100 and HMPREF1078_RS13105 overlap by 7 nucleotidesHMPREF1078_RS13105 and HMPREF1078_RS13110 are separated by 38 nucleotides HMPREF1078_RS13060: HMPREF1078_RS13060 - HDIG domain-containing protein, at 31,026 to 33,056 _RS13060 HMPREF1078_RS13065: HMPREF1078_RS13065 - glutamate--tRNA ligase, at 33,229 to 34,755 _RS13065 HMPREF1078_RS13070: HMPREF1078_RS13070 - glycosyltransferase N-terminal domain-containing protein, at 34,776 to 36,002 _RS13070 HMPREF1078_RS13075: HMPREF1078_RS13075 - GH92 family glycosyl hydrolase, at 36,107 to 38,431 _RS13075 HMPREF1078_RS13080: HMPREF1078_RS13080 - TonB-dependent receptor, at 39,170 to 42,235 _RS13080 HMPREF1078_RS13085: HMPREF1078_RS13085 - RagB/SusD family nutrient uptake outer membrane protein, at 42,266 to 44,131 _RS13085 HMPREF1078_RS13090: HMPREF1078_RS13090 - C1 family peptidase, at 44,227 to 45,621 _RS13090 HMPREF1078_RS13095: HMPREF1078_RS13095 - DUF2089 family protein, at 45,885 to 46,166 _RS13095 HMPREF1078_RS13100: HMPREF1078_RS13100 - YIP1 family protein, at 46,170 to 46,760 _RS13100 HMPREF1078_RS13105: HMPREF1078_RS13105 - HAD hydrolase-like protein, at 46,754 to 47,410 _RS13105 HMPREF1078_RS13110: HMPREF1078_RS13110 - gamma carbonic anhydrase family protein, at 47,449 to 47,970 _RS13110
Locus Name Description Strand Phenotype
HMPREF1078_RS13060 HMPREF1078_RS13060 HDIG domain-containing protein - strong
HMPREF1078_RS13065 HMPREF1078_RS13065 glutamate--tRNA ligase + no data
HMPREF1078_RS13070 HMPREF1078_RS13070 glycosyltransferase N-terminal domain-containing protein + no data
HMPREF1078_RS13075 HMPREF1078_RS13075 GH92 family glycosyl hydrolase + insig.
HMPREF1078_RS13080 HMPREF1078_RS13080 TonB-dependent receptor + insig.
HMPREF1078_RS13085 HMPREF1078_RS13085 RagB/SusD family nutrient uptake outer membrane protein + insig.
HMPREF1078_RS13090 HMPREF1078_RS13090 C1 family peptidase - cofit
HMPREF1078_RS13095 HMPREF1078_RS13095 DUF2089 family protein + sig.
HMPREF1078_RS13100 HMPREF1078_RS13100 YIP1 family protein + insig.
HMPREF1078_RS13105 HMPREF1078_RS13105 HAD hydrolase-like protein - insig.
HMPREF1078_RS13110 HMPREF1078_RS13110 gamma carbonic anhydrase family protein - insig.

Or browse nearby genes

Or see the comparative fitness browser