Gene info for HMPREF1078_RS13045 in Parabacteroides merdae CL09T00C40

Annotation: porin family protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976528, + strand, nucleotides 27,301 to 27,888
See nucleotide sequence around HMPREF1078_RS13045 or for all of scaffold NZ_JH976528

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS13020 and HMPREF1078_RS13025 are separated by 354 nucleotidesHMPREF1078_RS13025 and HMPREF1078_RS13030 are separated by 270 nucleotidesHMPREF1078_RS13030 and HMPREF1078_RS13035 overlap by 8 nucleotidesHMPREF1078_RS13035 and HMPREF1078_RS13040 are separated by 77 nucleotidesHMPREF1078_RS13040 and HMPREF1078_RS13045 are separated by 190 nucleotidesHMPREF1078_RS13045 and HMPREF1078_RS13050 are separated by 113 nucleotidesHMPREF1078_RS13050 and HMPREF1078_RS13055 are separated by 77 nucleotidesHMPREF1078_RS13055 and HMPREF1078_RS13060 overlap by 26 nucleotidesHMPREF1078_RS13060 and HMPREF1078_RS13065 are separated by 172 nucleotidesHMPREF1078_RS13065 and HMPREF1078_RS13070 are separated by 20 nucleotides HMPREF1078_RS13020: HMPREF1078_RS13020 - cell surface protein SprA, at 16,085 to 23,536 _RS13020 HMPREF1078_RS13025: HMPREF1078_RS13025 - uracil-DNA glycosylase, at 23,891 to 24,553 _RS13025 HMPREF1078_RS13030: HMPREF1078_RS13030 - tetraacyldisaccharide 4'-kinase, at 24,824 to 25,936 _RS13030 HMPREF1078_RS13035: HMPREF1078_RS13035 - thiamine-phosphate kinase, at 25,929 to 26,960 _RS13035 HMPREF1078_RS13040: HMPREF1078_RS13040 - tRNA-Phe, at 27,038 to 27,110 _RS13040 HMPREF1078_RS13045: HMPREF1078_RS13045 - porin family protein, at 27,301 to 27,888 _RS13045 HMPREF1078_RS13050: HMPREF1078_RS13050 - primosomal protein N', at 28,002 to 30,464 _RS13050 HMPREF1078_RS13055: HMPREF1078_RS13055 - low molecular weight protein-tyrosine-phosphatase, at 30,542 to 31,051 _RS13055 HMPREF1078_RS13060: HMPREF1078_RS13060 - HDIG domain-containing protein, at 31,026 to 33,056 _RS13060 HMPREF1078_RS13065: HMPREF1078_RS13065 - glutamate--tRNA ligase, at 33,229 to 34,755 _RS13065 HMPREF1078_RS13070: HMPREF1078_RS13070 - glycosyltransferase N-terminal domain-containing protein, at 34,776 to 36,002 _RS13070
Locus Name Description Strand Phenotype
HMPREF1078_RS13020 HMPREF1078_RS13020 cell surface protein SprA + strong
HMPREF1078_RS13025 HMPREF1078_RS13025 uracil-DNA glycosylase - insig.
HMPREF1078_RS13030 HMPREF1078_RS13030 tetraacyldisaccharide 4'-kinase + no data
HMPREF1078_RS13035 HMPREF1078_RS13035 thiamine-phosphate kinase + no data
HMPREF1078_RS13040 HMPREF1078_RS13040 tRNA-Phe + no data
HMPREF1078_RS13045 HMPREF1078_RS13045 porin family protein + cofit
HMPREF1078_RS13050 HMPREF1078_RS13050 primosomal protein N' + strong
HMPREF1078_RS13055 HMPREF1078_RS13055 low molecular weight protein-tyrosine-phosphatase + insig.
HMPREF1078_RS13060 HMPREF1078_RS13060 HDIG domain-containing protein - strong
HMPREF1078_RS13065 HMPREF1078_RS13065 glutamate--tRNA ligase + no data
HMPREF1078_RS13070 HMPREF1078_RS13070 glycosyltransferase N-terminal domain-containing protein + no data

Or browse nearby genes

Or see the comparative fitness browser