Gene info for HMPREF1078_RS12625 in Parabacteroides merdae CL09T00C40

Annotation: hybrid sensor histidine kinase/response regulator transcription factor
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, + strand, nucleotides 546,249 to 550,217
See nucleotide sequence around HMPREF1078_RS12625 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS12600 and HMPREF1078_RS12605 overlap by 4 nucleotidesHMPREF1078_RS12605 and HMPREF1078_RS12610 are separated by 106 nucleotidesHMPREF1078_RS12610 and HMPREF1078_RS12615 are separated by 6 nucleotidesHMPREF1078_RS12615 and HMPREF1078_RS12620 are separated by 623 nucleotidesHMPREF1078_RS12620 and HMPREF1078_RS12625 are separated by 222 nucleotidesHMPREF1078_RS12625 and HMPREF1078_RS12630 are separated by 108 nucleotidesHMPREF1078_RS12630 and HMPREF1078_RS12635 are separated by 89 nucleotidesHMPREF1078_RS12635 and HMPREF1078_RS12640 are separated by 3 nucleotidesHMPREF1078_RS12640 and HMPREF1078_RS12645 are separated by 2 nucleotidesHMPREF1078_RS12645 and HMPREF1078_RS18820 are separated by 120 nucleotides HMPREF1078_RS12600: HMPREF1078_RS12600 - translocation/assembly module TamB domain-containing protein, at 535,024 to 539,652 _RS12600 HMPREF1078_RS12605: HMPREF1078_RS12605 - BamA/TamA family outer membrane protein, at 539,649 to 541,952 _RS12605 HMPREF1078_RS12610: HMPREF1078_RS12610 - arginase, at 542,059 to 542,955 _RS12610 HMPREF1078_RS12615: HMPREF1078_RS12615 - ornithine--oxo-acid transaminase, at 542,962 to 544,170 _RS12615 HMPREF1078_RS12620: HMPREF1078_RS12620 - MFS transporter, at 544,794 to 546,026 _RS12620 HMPREF1078_RS12625: HMPREF1078_RS12625 - hybrid sensor histidine kinase/response regulator transcription factor, at 546,249 to 550,217 _RS12625 HMPREF1078_RS12630: HMPREF1078_RS12630 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 550,326 to 551,483 _RS12630 HMPREF1078_RS12635: HMPREF1078_RS12635 - D-alanine--D-alanine ligase, at 551,573 to 552,550 _RS12635 HMPREF1078_RS12640: HMPREF1078_RS12640 - RluA family pseudouridine synthase, at 552,554 to 553,633 _RS12640 HMPREF1078_RS12645: HMPREF1078_RS12645 - PASTA domain-containing protein, at 553,636 to 554,268 _RS12645 HMPREF1078_RS18820: HMPREF1078_RS18820 - 50S ribosomal protein L34, at 554,389 to 554,541 _RS18820
Locus Name Description Strand Phenotype
HMPREF1078_RS12600 HMPREF1078_RS12600 translocation/assembly module TamB domain-containing protein + strong
HMPREF1078_RS12605 HMPREF1078_RS12605 BamA/TamA family outer membrane protein + strong
HMPREF1078_RS12610 HMPREF1078_RS12610 arginase - insig.
HMPREF1078_RS12615 HMPREF1078_RS12615 ornithine--oxo-acid transaminase - insig.
HMPREF1078_RS12620 HMPREF1078_RS12620 MFS transporter - insig.
HMPREF1078_RS12625 HMPREF1078_RS12625 hybrid sensor histidine kinase/response regulator transcription factor + insig.
HMPREF1078_RS12630 HMPREF1078_RS12630 1-acyl-sn-glycerol-3-phosphate acyltransferase - no data
HMPREF1078_RS12635 HMPREF1078_RS12635 D-alanine--D-alanine ligase - no data
HMPREF1078_RS12640 HMPREF1078_RS12640 RluA family pseudouridine synthase - strong
HMPREF1078_RS12645 HMPREF1078_RS12645 PASTA domain-containing protein - no data
HMPREF1078_RS18820 HMPREF1078_RS18820 50S ribosomal protein L34 - no data

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