Gene info for HMPREF1078_RS12600 in Parabacteroides merdae CL09T00C40

Annotation: translocation/assembly module TamB domain-containing protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, + strand, nucleotides 535,024 to 539,652
See nucleotide sequence around HMPREF1078_RS12600 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS18810 and HMPREF1078_RS12580 are separated by 345 nucleotidesHMPREF1078_RS12580 and HMPREF1078_RS12585 are separated by 454 nucleotidesHMPREF1078_RS12585 and HMPREF1078_RS12590 are separated by 26 nucleotidesHMPREF1078_RS12590 and HMPREF1078_RS12595 are separated by 407 nucleotidesHMPREF1078_RS12595 and HMPREF1078_RS12600 are separated by 174 nucleotidesHMPREF1078_RS12600 and HMPREF1078_RS12605 overlap by 4 nucleotidesHMPREF1078_RS12605 and HMPREF1078_RS12610 are separated by 106 nucleotidesHMPREF1078_RS12610 and HMPREF1078_RS12615 are separated by 6 nucleotidesHMPREF1078_RS12615 and HMPREF1078_RS12620 are separated by 623 nucleotidesHMPREF1078_RS12620 and HMPREF1078_RS12625 are separated by 222 nucleotides HMPREF1078_RS18810: HMPREF1078_RS18810 - hypothetical protein, at 528,188 to 528,550 _RS18810 HMPREF1078_RS12580: HMPREF1078_RS12580 - thioesterase family protein, at 528,896 to 529,273 _RS12580 HMPREF1078_RS12585: HMPREF1078_RS12585 - TonB-dependent receptor, at 529,728 to 532,088 _RS12585 HMPREF1078_RS12590: HMPREF1078_RS12590 - Ig-like domain-containing protein, at 532,115 to 533,653 _RS12590 HMPREF1078_RS12595: HMPREF1078_RS12595 - inositol monophosphatase family protein, at 534,061 to 534,849 _RS12595 HMPREF1078_RS12600: HMPREF1078_RS12600 - translocation/assembly module TamB domain-containing protein, at 535,024 to 539,652 _RS12600 HMPREF1078_RS12605: HMPREF1078_RS12605 - BamA/TamA family outer membrane protein, at 539,649 to 541,952 _RS12605 HMPREF1078_RS12610: HMPREF1078_RS12610 - arginase, at 542,059 to 542,955 _RS12610 HMPREF1078_RS12615: HMPREF1078_RS12615 - ornithine--oxo-acid transaminase, at 542,962 to 544,170 _RS12615 HMPREF1078_RS12620: HMPREF1078_RS12620 - MFS transporter, at 544,794 to 546,026 _RS12620 HMPREF1078_RS12625: HMPREF1078_RS12625 - hybrid sensor histidine kinase/response regulator transcription factor, at 546,249 to 550,217 _RS12625
Locus Name Description Strand Phenotype
HMPREF1078_RS18810 HMPREF1078_RS18810 hypothetical protein - insig.
HMPREF1078_RS12580 HMPREF1078_RS12580 thioesterase family protein - insig.
HMPREF1078_RS12585 HMPREF1078_RS12585 TonB-dependent receptor + strong
HMPREF1078_RS12590 HMPREF1078_RS12590 Ig-like domain-containing protein + strong
HMPREF1078_RS12595 HMPREF1078_RS12595 inositol monophosphatase family protein - cofit
HMPREF1078_RS12600 HMPREF1078_RS12600 translocation/assembly module TamB domain-containing protein + strong
HMPREF1078_RS12605 HMPREF1078_RS12605 BamA/TamA family outer membrane protein + strong
HMPREF1078_RS12610 HMPREF1078_RS12610 arginase - insig.
HMPREF1078_RS12615 HMPREF1078_RS12615 ornithine--oxo-acid transaminase - insig.
HMPREF1078_RS12620 HMPREF1078_RS12620 MFS transporter - insig.
HMPREF1078_RS12625 HMPREF1078_RS12625 hybrid sensor histidine kinase/response regulator transcription factor + insig.

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