Gene info for HMPREF1078_RS12345 in Parabacteroides merdae CL09T00C40

Annotation: tryptophan--tRNA ligase
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, - strand, nucleotides 460,667 to 461,719
See nucleotide sequence around HMPREF1078_RS12345 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS12320 and HMPREF1078_RS12325 are separated by 5 nucleotidesHMPREF1078_RS12325 and HMPREF1078_RS12330 are separated by 5 nucleotidesHMPREF1078_RS12330 and HMPREF1078_RS12335 are separated by 55 nucleotidesHMPREF1078_RS12335 and HMPREF1078_RS12340 are separated by 81 nucleotidesHMPREF1078_RS12340 and HMPREF1078_RS12345 are separated by 217 nucleotidesHMPREF1078_RS12345 and HMPREF1078_RS12350 are separated by 228 nucleotidesHMPREF1078_RS12350 and HMPREF1078_RS12360 are separated by 1088 nucleotidesHMPREF1078_RS12360 and HMPREF1078_RS12365 are separated by 145 nucleotidesHMPREF1078_RS12365 and HMPREF1078_RS12370 are separated by 2 nucleotidesHMPREF1078_RS12370 and HMPREF1078_RS12375 are separated by 6 nucleotides HMPREF1078_RS12320: HMPREF1078_RS12320 - DUF4249 domain-containing protein, at 454,499 to 455,521 _RS12320 HMPREF1078_RS12325: HMPREF1078_RS12325 - TonB-dependent receptor, at 455,527 to 458,187 _RS12325 HMPREF1078_RS12330: HMPREF1078_RS12330 - FecR domain-containing protein, at 458,193 to 459,038 _RS12330 HMPREF1078_RS12335: HMPREF1078_RS12335 - porin family protein, at 459,094 to 459,852 _RS12335 HMPREF1078_RS12340: HMPREF1078_RS12340 - RNA polymerase sigma-70 factor, at 459,934 to 460,449 _RS12340 HMPREF1078_RS12345: HMPREF1078_RS12345 - tryptophan--tRNA ligase, at 460,667 to 461,719 _RS12345 HMPREF1078_RS12350: HMPREF1078_RS12350 - 6-bladed beta-propeller, at 461,948 to 462,949 _RS12350 HMPREF1078_RS12360: HMPREF1078_RS12360 - hypothetical protein, at 464,038 to 465,150 _RS12360 HMPREF1078_RS12365: HMPREF1078_RS12365 - NVEALA domain-containing protein, at 465,296 to 465,526 _RS12365 HMPREF1078_RS12370: HMPREF1078_RS12370 - BF3164 family lipoprotein, at 465,529 to 466,584 _RS12370 HMPREF1078_RS12375: HMPREF1078_RS12375 - DUF1573 domain-containing protein, at 466,591 to 467,454 _RS12375
Locus Name Description Strand Phenotype
HMPREF1078_RS12320 HMPREF1078_RS12320 DUF4249 domain-containing protein - cofit
HMPREF1078_RS12325 HMPREF1078_RS12325 TonB-dependent receptor - cofit
HMPREF1078_RS12330 HMPREF1078_RS12330 FecR domain-containing protein - cofit
HMPREF1078_RS12335 HMPREF1078_RS12335 porin family protein - insig.
HMPREF1078_RS12340 HMPREF1078_RS12340 RNA polymerase sigma-70 factor - cofit
HMPREF1078_RS12345 HMPREF1078_RS12345 tryptophan--tRNA ligase - no data
HMPREF1078_RS12350 HMPREF1078_RS12350 6-bladed beta-propeller + insig.
HMPREF1078_RS12360 HMPREF1078_RS12360 hypothetical protein - insig.
HMPREF1078_RS12365 HMPREF1078_RS12365 NVEALA domain-containing protein + insig.
HMPREF1078_RS12370 HMPREF1078_RS12370 BF3164 family lipoprotein + insig.
HMPREF1078_RS12375 HMPREF1078_RS12375 DUF1573 domain-containing protein + insig.

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