Gene info for HMPREF1078_RS12140 in Parabacteroides merdae CL09T00C40

Annotation: sigma-54 dependent transcriptional regulator
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, - strand, nucleotides 399,133 to 400,497
See nucleotide sequence around HMPREF1078_RS12140 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS12115 and HMPREF1078_RS12120 overlap by 6 nucleotidesHMPREF1078_RS12120 and HMPREF1078_RS12125 are separated by 80 nucleotidesHMPREF1078_RS12125 and HMPREF1078_RS12130 are separated by 99 nucleotidesHMPREF1078_RS12130 and HMPREF1078_RS12135 overlap by 35 nucleotidesHMPREF1078_RS12135 and HMPREF1078_RS12140 overlap by 4 nucleotidesHMPREF1078_RS12140 and HMPREF1078_RS12145 are separated by 745 nucleotidesHMPREF1078_RS12145 and HMPREF1078_RS12150 are separated by 47 nucleotidesHMPREF1078_RS12150 and HMPREF1078_RS12155 are separated by 10 nucleotidesHMPREF1078_RS12155 and HMPREF1078_RS12160 are separated by 22 nucleotidesHMPREF1078_RS12160 and HMPREF1078_RS12165 are separated by 40 nucleotides HMPREF1078_RS12115: HMPREF1078_RS12115 - thioredoxin, at 392,225 to 392,539 _RS12115 HMPREF1078_RS12120: HMPREF1078_RS12120 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 392,534 to 393,214 _RS12120 HMPREF1078_RS12125: HMPREF1078_RS12125 - TonB-dependent receptor, at 393,295 to 395,685 _RS12125 HMPREF1078_RS12130: HMPREF1078_RS12130 - ATP-binding protein, at 395,785 to 398,169 _RS12130 HMPREF1078_RS12135: HMPREF1078_RS12135 - HAMP domain-containing sensor histidine kinase, at 398,135 to 399,136 _RS12135 HMPREF1078_RS12140: HMPREF1078_RS12140 - sigma-54 dependent transcriptional regulator, at 399,133 to 400,497 _RS12140 HMPREF1078_RS12145: HMPREF1078_RS12145 - TolC family protein, at 401,243 to 402,712 _RS12145 HMPREF1078_RS12150: HMPREF1078_RS12150 - efflux RND transporter periplasmic adaptor subunit, at 402,760 to 404,010 _RS12150 HMPREF1078_RS12155: HMPREF1078_RS12155 - ABC transporter permease, at 404,021 to 406,426 _RS12155 HMPREF1078_RS12160: HMPREF1078_RS12160 - ABC transporter permease, at 406,449 to 408,773 _RS12160 HMPREF1078_RS12165: HMPREF1078_RS12165 - ABC transporter permease, at 408,814 to 411,204 _RS12165
Locus Name Description Strand Phenotype
HMPREF1078_RS12115 HMPREF1078_RS12115 thioredoxin + strong
HMPREF1078_RS12120 HMPREF1078_RS12120 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD - insig.
HMPREF1078_RS12125 HMPREF1078_RS12125 TonB-dependent receptor + cofit
HMPREF1078_RS12130 HMPREF1078_RS12130 ATP-binding protein + insig.
HMPREF1078_RS12135 HMPREF1078_RS12135 HAMP domain-containing sensor histidine kinase - insig.
HMPREF1078_RS12140 HMPREF1078_RS12140 sigma-54 dependent transcriptional regulator - insig.
HMPREF1078_RS12145 HMPREF1078_RS12145 TolC family protein + insig.
HMPREF1078_RS12150 HMPREF1078_RS12150 efflux RND transporter periplasmic adaptor subunit + insig.
HMPREF1078_RS12155 HMPREF1078_RS12155 ABC transporter permease + insig.
HMPREF1078_RS12160 HMPREF1078_RS12160 ABC transporter permease + insig.
HMPREF1078_RS12165 HMPREF1078_RS12165 ABC transporter permease + insig.

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