Gene info for HMPREF1078_RS12120 in Parabacteroides merdae CL09T00C40

Annotation: tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, - strand, nucleotides 392,534 to 393,214
See nucleotide sequence around HMPREF1078_RS12120 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS12095 and HMPREF1078_RS12100 are separated by 5 nucleotidesHMPREF1078_RS12100 and HMPREF1078_RS12105 are separated by 331 nucleotidesHMPREF1078_RS12105 and HMPREF1078_RS12110 are separated by 127 nucleotidesHMPREF1078_RS12110 and HMPREF1078_RS12115 are separated by 68 nucleotidesHMPREF1078_RS12115 and HMPREF1078_RS12120 overlap by 6 nucleotidesHMPREF1078_RS12120 and HMPREF1078_RS12125 are separated by 80 nucleotidesHMPREF1078_RS12125 and HMPREF1078_RS12130 are separated by 99 nucleotidesHMPREF1078_RS12130 and HMPREF1078_RS12135 overlap by 35 nucleotidesHMPREF1078_RS12135 and HMPREF1078_RS12140 overlap by 4 nucleotidesHMPREF1078_RS12140 and HMPREF1078_RS12145 are separated by 745 nucleotides HMPREF1078_RS12095: HMPREF1078_RS12095 - 30S ribosomal protein S9, at 386,420 to 386,806 _RS12095 HMPREF1078_RS12100: HMPREF1078_RS12100 - 50S ribosomal protein L13, at 386,812 to 387,267 _RS12100 HMPREF1078_RS12105: HMPREF1078_RS12105 - porin family protein, at 387,599 to 388,228 _RS12105 HMPREF1078_RS12110: HMPREF1078_RS12110 - DNA polymerase III subunit alpha, at 388,356 to 392,156 _RS12110 HMPREF1078_RS12115: HMPREF1078_RS12115 - thioredoxin, at 392,225 to 392,539 _RS12115 HMPREF1078_RS12120: HMPREF1078_RS12120 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 392,534 to 393,214 _RS12120 HMPREF1078_RS12125: HMPREF1078_RS12125 - TonB-dependent receptor, at 393,295 to 395,685 _RS12125 HMPREF1078_RS12130: HMPREF1078_RS12130 - ATP-binding protein, at 395,785 to 398,169 _RS12130 HMPREF1078_RS12135: HMPREF1078_RS12135 - HAMP domain-containing sensor histidine kinase, at 398,135 to 399,136 _RS12135 HMPREF1078_RS12140: HMPREF1078_RS12140 - sigma-54 dependent transcriptional regulator, at 399,133 to 400,497 _RS12140 HMPREF1078_RS12145: HMPREF1078_RS12145 - TolC family protein, at 401,243 to 402,712 _RS12145
Locus Name Description Strand Phenotype
HMPREF1078_RS12095 HMPREF1078_RS12095 30S ribosomal protein S9 - no data
HMPREF1078_RS12100 HMPREF1078_RS12100 50S ribosomal protein L13 - no data
HMPREF1078_RS12105 HMPREF1078_RS12105 porin family protein - insig.
HMPREF1078_RS12110 HMPREF1078_RS12110 DNA polymerase III subunit alpha + no data
HMPREF1078_RS12115 HMPREF1078_RS12115 thioredoxin + strong
HMPREF1078_RS12120 HMPREF1078_RS12120 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD - insig.
HMPREF1078_RS12125 HMPREF1078_RS12125 TonB-dependent receptor + cofit
HMPREF1078_RS12130 HMPREF1078_RS12130 ATP-binding protein + insig.
HMPREF1078_RS12135 HMPREF1078_RS12135 HAMP domain-containing sensor histidine kinase - insig.
HMPREF1078_RS12140 HMPREF1078_RS12140 sigma-54 dependent transcriptional regulator - insig.
HMPREF1078_RS12145 HMPREF1078_RS12145 TolC family protein + insig.

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