Gene info for HMPREF1078_RS12100 in Parabacteroides merdae CL09T00C40

Annotation: 50S ribosomal protein L13
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, - strand, nucleotides 386,812 to 387,267
See nucleotide sequence around HMPREF1078_RS12100 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS12075 and HMPREF1078_RS12080 are separated by 25 nucleotidesHMPREF1078_RS12080 and HMPREF1078_RS12085 are separated by 110 nucleotidesHMPREF1078_RS12085 and HMPREF1078_RS12090 are separated by 149 nucleotidesHMPREF1078_RS12090 and HMPREF1078_RS12095 are separated by 141 nucleotidesHMPREF1078_RS12095 and HMPREF1078_RS12100 are separated by 5 nucleotidesHMPREF1078_RS12100 and HMPREF1078_RS12105 are separated by 331 nucleotidesHMPREF1078_RS12105 and HMPREF1078_RS12110 are separated by 127 nucleotidesHMPREF1078_RS12110 and HMPREF1078_RS12115 are separated by 68 nucleotidesHMPREF1078_RS12115 and HMPREF1078_RS12120 overlap by 6 nucleotidesHMPREF1078_RS12120 and HMPREF1078_RS12125 are separated by 80 nucleotides HMPREF1078_RS12075: HMPREF1078_RS12075 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 381,750 to 382,967 _RS12075 HMPREF1078_RS12080: HMPREF1078_RS12080 - pyridoxal phosphate-dependent aminotransferase, at 382,993 to 384,186 _RS12080 HMPREF1078_RS12085: HMPREF1078_RS12085 - translation elongation factor Ts, at 384,297 to 385,286 _RS12085 HMPREF1078_RS12090: HMPREF1078_RS12090 - 30S ribosomal protein S2, at 385,436 to 386,278 _RS12090 HMPREF1078_RS12095: HMPREF1078_RS12095 - 30S ribosomal protein S9, at 386,420 to 386,806 _RS12095 HMPREF1078_RS12100: HMPREF1078_RS12100 - 50S ribosomal protein L13, at 386,812 to 387,267 _RS12100 HMPREF1078_RS12105: HMPREF1078_RS12105 - porin family protein, at 387,599 to 388,228 _RS12105 HMPREF1078_RS12110: HMPREF1078_RS12110 - DNA polymerase III subunit alpha, at 388,356 to 392,156 _RS12110 HMPREF1078_RS12115: HMPREF1078_RS12115 - thioredoxin, at 392,225 to 392,539 _RS12115 HMPREF1078_RS12120: HMPREF1078_RS12120 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 392,534 to 393,214 _RS12120 HMPREF1078_RS12125: HMPREF1078_RS12125 - TonB-dependent receptor, at 393,295 to 395,685 _RS12125
Locus Name Description Strand Phenotype
HMPREF1078_RS12075 HMPREF1078_RS12075 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II + no data
HMPREF1078_RS12080 HMPREF1078_RS12080 pyridoxal phosphate-dependent aminotransferase + strong
HMPREF1078_RS12085 HMPREF1078_RS12085 translation elongation factor Ts - no data
HMPREF1078_RS12090 HMPREF1078_RS12090 30S ribosomal protein S2 - no data
HMPREF1078_RS12095 HMPREF1078_RS12095 30S ribosomal protein S9 - no data
HMPREF1078_RS12100 HMPREF1078_RS12100 50S ribosomal protein L13 - no data
HMPREF1078_RS12105 HMPREF1078_RS12105 porin family protein - sig.
HMPREF1078_RS12110 HMPREF1078_RS12110 DNA polymerase III subunit alpha + no data
HMPREF1078_RS12115 HMPREF1078_RS12115 thioredoxin + strong
HMPREF1078_RS12120 HMPREF1078_RS12120 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD - insig.
HMPREF1078_RS12125 HMPREF1078_RS12125 TonB-dependent receptor + cofit

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