Gene info for HMPREF1078_RS11965 in Parabacteroides merdae CL09T00C40

Annotation: ribosome assembly cofactor RimP
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, - strand, nucleotides 352,682 to 353,149
See nucleotide sequence around HMPREF1078_RS11965 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS11940 and HMPREF1078_RS11945 are separated by 88 nucleotidesHMPREF1078_RS11945 and HMPREF1078_RS11950 are separated by 33 nucleotidesHMPREF1078_RS11950 and HMPREF1078_RS11955 are separated by 3 nucleotidesHMPREF1078_RS11955 and HMPREF1078_RS11960 are separated by 20 nucleotidesHMPREF1078_RS11960 and HMPREF1078_RS11965 are separated by 7 nucleotidesHMPREF1078_RS11965 and HMPREF1078_RS11970 are separated by 389 nucleotidesHMPREF1078_RS11970 and HMPREF1078_RS11975 are separated by 3 nucleotidesHMPREF1078_RS11975 and HMPREF1078_RS11980 overlap by 17 nucleotidesHMPREF1078_RS11980 and HMPREF1078_RS11985 are separated by 173 nucleotidesHMPREF1078_RS11985 and HMPREF1078_RS11990 are separated by 101 nucleotides HMPREF1078_RS11940: HMPREF1078_RS11940 - Fe-S cluster assembly ATPase SufC, at 345,589 to 346,344 _RS11940 HMPREF1078_RS11945: HMPREF1078_RS11945 - Fe-S cluster assembly protein SufB, at 346,433 to 347,878 _RS11945 HMPREF1078_RS11950: HMPREF1078_RS11950 - CvpA family protein, at 347,912 to 348,403 _RS11950 HMPREF1078_RS11955: HMPREF1078_RS11955 - translation initiation factor IF-2, at 348,407 to 351,379 _RS11955 HMPREF1078_RS11960: HMPREF1078_RS11960 - transcription termination factor NusA, at 351,400 to 352,674 _RS11960 HMPREF1078_RS11965: HMPREF1078_RS11965 - ribosome assembly cofactor RimP, at 352,682 to 353,149 _RS11965 HMPREF1078_RS11970: HMPREF1078_RS11970 - TonB-dependent receptor plug domain-containing protein, at 353,539 to 355,746 _RS11970 HMPREF1078_RS11975: HMPREF1078_RS11975 - nicotinamide riboside transporter PnuC, at 355,750 to 356,364 _RS11975 HMPREF1078_RS11980: HMPREF1078_RS11980 - thiamine diphosphokinase, at 356,348 to 356,986 _RS11980 HMPREF1078_RS11985: HMPREF1078_RS11985 - hypothetical protein, at 357,160 to 357,504 _RS11985 HMPREF1078_RS11990: HMPREF1078_RS11990 - DUF3868 domain-containing protein, at 357,606 to 359,072 _RS11990
Locus Name Description Strand Phenotype
HMPREF1078_RS11940 HMPREF1078_RS11940 Fe-S cluster assembly ATPase SufC - no data
HMPREF1078_RS11945 HMPREF1078_RS11945 Fe-S cluster assembly protein SufB - no data
HMPREF1078_RS11950 HMPREF1078_RS11950 CvpA family protein - cofit
HMPREF1078_RS11955 HMPREF1078_RS11955 translation initiation factor IF-2 - no data
HMPREF1078_RS11960 HMPREF1078_RS11960 transcription termination factor NusA - no data
HMPREF1078_RS11965 HMPREF1078_RS11965 ribosome assembly cofactor RimP - strong
HMPREF1078_RS11970 HMPREF1078_RS11970 TonB-dependent receptor plug domain-containing protein + cofit
HMPREF1078_RS11975 HMPREF1078_RS11975 nicotinamide riboside transporter PnuC + strong
HMPREF1078_RS11980 HMPREF1078_RS11980 thiamine diphosphokinase + strong
HMPREF1078_RS11985 HMPREF1078_RS11985 hypothetical protein - insig.
HMPREF1078_RS11990 HMPREF1078_RS11990 DUF3868 domain-containing protein - insig.

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