Gene info for HMPREF1078_RS11240 in Parabacteroides merdae CL09T00C40

Annotation: peptidoglycan DD-metalloendopeptidase family protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976527, + strand, nucleotides 169,708 to 170,958
See nucleotide sequence around HMPREF1078_RS11240 or for all of scaffold NZ_JH976527

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS11220 and HMPREF1078_RS11225 are separated by 51 nucleotidesHMPREF1078_RS11225 and HMPREF1078_RS11230 are separated by 53 nucleotidesHMPREF1078_RS11230 and HMPREF1078_RS11235 are separated by 10 nucleotidesHMPREF1078_RS11235 and HMPREF1078_RS19640 are separated by 971 nucleotidesHMPREF1078_RS19640 and HMPREF1078_RS11240 overlap by 4 nucleotidesHMPREF1078_RS11240 and HMPREF1078_RS11245 are separated by 10 nucleotidesHMPREF1078_RS11245 and HMPREF1078_RS11250 are separated by 76 nucleotidesHMPREF1078_RS11250 and HMPREF1078_RS11255 are separated by 153 nucleotidesHMPREF1078_RS11255 and HMPREF1078_RS11260 are separated by 72 nucleotidesHMPREF1078_RS11260 and HMPREF1078_RS11265 are separated by 208 nucleotides HMPREF1078_RS11220: HMPREF1078_RS11220 - DUF1343 domain-containing protein, at 164,508 to 165,701 _RS11220 HMPREF1078_RS11225: HMPREF1078_RS11225 - sensor histidine kinase, at 165,753 to 167,639 _RS11225 HMPREF1078_RS11230: HMPREF1078_RS11230 - META domain-containing protein, at 167,693 to 168,136 _RS11230 HMPREF1078_RS11235: HMPREF1078_RS11235 - META domain-containing protein, at 168,147 to 168,572 _RS11235 HMPREF1078_RS19640: HMPREF1078_RS19640 - hypothetical protein, at 169,544 to 169,711 _RS19640 HMPREF1078_RS11240: HMPREF1078_RS11240 - peptidoglycan DD-metalloendopeptidase family protein, at 169,708 to 170,958 _RS11240 HMPREF1078_RS11245: HMPREF1078_RS11245 - YccF domain-containing protein, at 170,969 to 171,337 _RS11245 HMPREF1078_RS11250: HMPREF1078_RS11250 - glutamate racemase, at 171,414 to 172,250 _RS11250 HMPREF1078_RS11255: HMPREF1078_RS11255 - OmpH family outer membrane protein, at 172,404 to 172,901 _RS11255 HMPREF1078_RS11260: HMPREF1078_RS11260 - OmpH family outer membrane protein, at 172,974 to 173,489 _RS11260 HMPREF1078_RS11265: HMPREF1078_RS11265 - outer membrane protein assembly factor BamA, at 173,698 to 176,385 _RS11265
Locus Name Description Strand Phenotype
HMPREF1078_RS11220 HMPREF1078_RS11220 DUF1343 domain-containing protein + insig.
HMPREF1078_RS11225 HMPREF1078_RS11225 sensor histidine kinase + insig.
HMPREF1078_RS11230 HMPREF1078_RS11230 META domain-containing protein - insig.
HMPREF1078_RS11235 HMPREF1078_RS11235 META domain-containing protein - insig.
HMPREF1078_RS19640 HMPREF1078_RS19640 hypothetical protein + insig.
HMPREF1078_RS11240 HMPREF1078_RS11240 peptidoglycan DD-metalloendopeptidase family protein + insig.
HMPREF1078_RS11245 HMPREF1078_RS11245 YccF domain-containing protein + insig.
HMPREF1078_RS11250 HMPREF1078_RS11250 glutamate racemase - no data
HMPREF1078_RS11255 HMPREF1078_RS11255 OmpH family outer membrane protein - no data
HMPREF1078_RS11260 HMPREF1078_RS11260 OmpH family outer membrane protein - strong
HMPREF1078_RS11265 HMPREF1078_RS11265 outer membrane protein assembly factor BamA - no data

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