Gene info for HMPREF1078_RS08780 in Parabacteroides merdae CL09T00C40

Annotation: trimeric intracellular cation channel family protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976526, - strand, nucleotides 340,981 to 341,592
See nucleotide sequence around HMPREF1078_RS08780 or for all of scaffold NZ_JH976526

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS08755 and HMPREF1078_RS08760 are separated by 28 nucleotidesHMPREF1078_RS08760 and HMPREF1078_RS08765 are separated by 28 nucleotidesHMPREF1078_RS08765 and HMPREF1078_RS19190 are separated by 91 nucleotidesHMPREF1078_RS19190 and HMPREF1078_RS19195 are separated by 30 nucleotidesHMPREF1078_RS19195 and HMPREF1078_RS08780 are separated by 18 nucleotidesHMPREF1078_RS08780 and HMPREF1078_RS08785 are separated by 156 nucleotidesHMPREF1078_RS08785 and HMPREF1078_RS08790 overlap by 4 nucleotidesHMPREF1078_RS08790 and HMPREF1078_RS08795 are separated by 151 nucleotidesHMPREF1078_RS08795 and HMPREF1078_RS08800 are separated by 14 nucleotidesHMPREF1078_RS08800 and HMPREF1078_RS08805 are separated by 181 nucleotides HMPREF1078_RS08755: HMPREF1078_RS08755 - tRNA-Lys, at 338,692 to 338,764 _RS08755 HMPREF1078_RS08760: HMPREF1078_RS08760 - tRNA-Lys, at 338,793 to 338,865 _RS08760 HMPREF1078_RS08765: HMPREF1078_RS08765 - tRNA-Lys, at 338,894 to 338,966 _RS08765 HMPREF1078_RS19190: HMPREF1078_RS19190 - MBL fold metallo-hydrolase, at 339,058 to 339,861 _RS19190 HMPREF1078_RS19195: HMPREF1078_RS19195 - type I asparaginase, at 339,892 to 340,962 _RS19195 HMPREF1078_RS08780: HMPREF1078_RS08780 - trimeric intracellular cation channel family protein, at 340,981 to 341,592 _RS08780 HMPREF1078_RS08785: HMPREF1078_RS08785 - DUF3943 domain-containing protein, at 341,749 to 343,227 _RS08785 HMPREF1078_RS08790: HMPREF1078_RS08790 - ABC-F family ATP-binding cassette domain-containing protein, at 343,224 to 344,861 _RS08790 HMPREF1078_RS08795: HMPREF1078_RS08795 - alpha/beta fold hydrolase, at 345,013 to 346,038 _RS08795 HMPREF1078_RS08800: HMPREF1078_RS08800 - aldo/keto reductase, at 346,053 to 347,234 _RS08800 HMPREF1078_RS08805: HMPREF1078_RS08805 - helix-turn-helix domain-containing protein, at 347,416 to 348,312 _RS08805
Locus Name Description Strand Phenotype
HMPREF1078_RS08755 HMPREF1078_RS08755 tRNA-Lys - insig.
HMPREF1078_RS08760 HMPREF1078_RS08760 tRNA-Lys - insig.
HMPREF1078_RS08765 HMPREF1078_RS08765 tRNA-Lys - no data
HMPREF1078_RS19190 HMPREF1078_RS19190 MBL fold metallo-hydrolase - strong
HMPREF1078_RS19195 HMPREF1078_RS19195 type I asparaginase - insig.
HMPREF1078_RS08780 HMPREF1078_RS08780 trimeric intracellular cation channel family protein - insig.
HMPREF1078_RS08785 HMPREF1078_RS08785 DUF3943 domain-containing protein + strong
HMPREF1078_RS08790 HMPREF1078_RS08790 ABC-F family ATP-binding cassette domain-containing protein - insig.
HMPREF1078_RS08795 HMPREF1078_RS08795 alpha/beta fold hydrolase - insig.
HMPREF1078_RS08800 HMPREF1078_RS08800 aldo/keto reductase - insig.
HMPREF1078_RS08805 HMPREF1078_RS08805 helix-turn-helix domain-containing protein + insig.

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