Gene info for HMPREF1078_RS08295 in Parabacteroides merdae CL09T00C40

Annotation: site-specific integrase
Type 1: Protein-coding gene
Located on scaffold NZ_JH976526, - strand, nucleotides 231,585 to 232,511
See nucleotide sequence around HMPREF1078_RS08295 or for all of scaffold NZ_JH976526

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS08270 and HMPREF1078_RS08275 are separated by 12 nucleotidesHMPREF1078_RS08275 and HMPREF1078_RS08280 are separated by 1218 nucleotidesHMPREF1078_RS08280 and HMPREF1078_RS08285 are separated by 24 nucleotidesHMPREF1078_RS08285 and HMPREF1078_RS08290 are separated by 279 nucleotidesHMPREF1078_RS08290 and HMPREF1078_RS08295 are separated by 68 nucleotidesHMPREF1078_RS08295 and HMPREF1078_RS08300 are separated by 7 nucleotidesHMPREF1078_RS08300 and HMPREF1078_RS08305 are separated by 29 nucleotidesHMPREF1078_RS08305 and HMPREF1078_RS08310 are separated by 4 nucleotidesHMPREF1078_RS08310 and HMPREF1078_RS08315 are separated by 227 nucleotidesHMPREF1078_RS08315 and HMPREF1078_RS08320 are separated by 477 nucleotides HMPREF1078_RS08270: HMPREF1078_RS08270 - RagB/SusD family nutrient uptake outer membrane protein, at 222,034 to 223,650 _RS08270 HMPREF1078_RS08275: HMPREF1078_RS08275 - SusC/RagA family TonB-linked outer membrane protein, at 223,663 to 226,359 _RS08275 HMPREF1078_RS08280: HMPREF1078_RS08280 - carboxymuconolactone decarboxylase family protein, at 227,578 to 229,137 _RS08280 HMPREF1078_RS08285: HMPREF1078_RS08285 - lactonase family protein, at 229,162 to 230,316 _RS08285 HMPREF1078_RS08290: HMPREF1078_RS08290 - helix-turn-helix domain-containing protein, at 230,596 to 231,516 _RS08290 HMPREF1078_RS08295: HMPREF1078_RS08295 - site-specific integrase, at 231,585 to 232,511 _RS08295 HMPREF1078_RS08300: HMPREF1078_RS08300 - hypothetical protein, at 232,519 to 233,280 _RS08300 HMPREF1078_RS08305: HMPREF1078_RS08305 - relaxase/mobilization nuclease domain-containing protein, at 233,310 to 234,230 _RS08305 HMPREF1078_RS08310: HMPREF1078_RS08310 - plasmid mobilization relaxosome protein MobC, at 234,235 to 234,606 _RS08310 HMPREF1078_RS08315: HMPREF1078_RS08315 - DUF3408 domain-containing protein, at 234,834 to 235,328 _RS08315 HMPREF1078_RS08320: HMPREF1078_RS08320 - helix-turn-helix domain-containing protein, at 235,806 to 236,117 _RS08320
Locus Name Description Strand Phenotype
HMPREF1078_RS08270 HMPREF1078_RS08270 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS08275 HMPREF1078_RS08275 SusC/RagA family TonB-linked outer membrane protein - insig.
HMPREF1078_RS08280 HMPREF1078_RS08280 carboxymuconolactone decarboxylase family protein - sig.
HMPREF1078_RS08285 HMPREF1078_RS08285 lactonase family protein - insig.
HMPREF1078_RS08290 HMPREF1078_RS08290 helix-turn-helix domain-containing protein + insig.
HMPREF1078_RS08295 HMPREF1078_RS08295 site-specific integrase - insig.
HMPREF1078_RS08300 HMPREF1078_RS08300 hypothetical protein - insig.
HMPREF1078_RS08305 HMPREF1078_RS08305 relaxase/mobilization nuclease domain-containing protein - insig.
HMPREF1078_RS08310 HMPREF1078_RS08310 plasmid mobilization relaxosome protein MobC - no data
HMPREF1078_RS08315 HMPREF1078_RS08315 DUF3408 domain-containing protein - insig.
HMPREF1078_RS08320 HMPREF1078_RS08320 helix-turn-helix domain-containing protein + no data

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