Gene info for HMPREF1078_RS08005 in Parabacteroides merdae CL09T00C40

Annotation: efflux RND transporter periplasmic adaptor subunit
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH976526, + strand, nucleotides 162,346 to 163,988
See nucleotide sequence around HMPREF1078_RS08005 or for all of scaffold NZ_JH976526

Nearby Genes

500 ntHMPREF1078_RS07985 and HMPREF1078_RS07990 are separated by 97 nucleotidesHMPREF1078_RS07990 and HMPREF1078_RS19860 are separated by 3 nucleotidesHMPREF1078_RS19860 and HMPREF1078_RS07995 are separated by 5 nucleotidesHMPREF1078_RS07995 and HMPREF1078_RS08000 are separated by 430 nucleotidesHMPREF1078_RS08000 and HMPREF1078_RS08005 are separated by 4 nucleotidesHMPREF1078_RS08005 and HMPREF1078_RS08010 are separated by 49 nucleotidesHMPREF1078_RS08010 and HMPREF1078_RS08015 are separated by 30 nucleotidesHMPREF1078_RS08015 and HMPREF1078_RS08020 are separated by 214 nucleotidesHMPREF1078_RS08020 and HMPREF1078_RS08025 are separated by 9 nucleotidesHMPREF1078_RS08025 and HMPREF1078_RS08030 are separated by 130 nucleotides HMPREF1078_RS07985: HMPREF1078_RS07985 - ClbS/DfsB family four-helix bundle protein, at 157,386 to 157,925 _RS07985 HMPREF1078_RS07990: HMPREF1078_RS07990 - site-specific integrase, at 158,023 to 159,039 _RS07990 HMPREF1078_RS19860: HMPREF1078_RS19860 - hypothetical protein, at 159,043 to 159,186 _RS19860 HMPREF1078_RS07995: HMPREF1078_RS07995 - site-specific integrase, at 159,192 to 160,421 _RS07995 HMPREF1078_RS08000: HMPREF1078_RS08000 - TolC family protein, at 160,852 to 162,341 _RS08000 HMPREF1078_RS08005: HMPREF1078_RS08005 - efflux RND transporter periplasmic adaptor subunit, at 162,346 to 163,988 _RS08005 HMPREF1078_RS08010: HMPREF1078_RS08010 - helix-turn-helix domain-containing protein, at 164,038 to 164,874 _RS08010 HMPREF1078_RS08015: HMPREF1078_RS08015 - helix-turn-helix domain-containing protein, at 164,905 to 165,711 _RS08015 HMPREF1078_RS08020: HMPREF1078_RS08020 - phosphatidylglycerol lysyltransferase domain-containing protein, at 165,926 to 166,834 _RS08020 HMPREF1078_RS08025: HMPREF1078_RS08025 - GNAT family N-acetyltransferase, at 166,844 to 167,788 _RS08025 HMPREF1078_RS08030: HMPREF1078_RS08030 - MATE family efflux transporter, at 167,919 to 169,262 _RS08030
Locus Name Description Strand Phenotype
HMPREF1078_RS07985 HMPREF1078_RS07985 ClbS/DfsB family four-helix bundle protein + insig.
HMPREF1078_RS07990 HMPREF1078_RS07990 site-specific integrase - insig.
HMPREF1078_RS19860 HMPREF1078_RS19860 hypothetical protein - no data
HMPREF1078_RS07995 HMPREF1078_RS07995 site-specific integrase - insig.
HMPREF1078_RS08000 HMPREF1078_RS08000 TolC family protein + insig.
HMPREF1078_RS08005 HMPREF1078_RS08005 efflux RND transporter periplasmic adaptor subunit + insig.
HMPREF1078_RS08010 HMPREF1078_RS08010 helix-turn-helix domain-containing protein - insig.
HMPREF1078_RS08015 HMPREF1078_RS08015 helix-turn-helix domain-containing protein - strong
HMPREF1078_RS08020 HMPREF1078_RS08020 phosphatidylglycerol lysyltransferase domain-containing protein + sig.
HMPREF1078_RS08025 HMPREF1078_RS08025 GNAT family N-acetyltransferase + sig.
HMPREF1078_RS08030 HMPREF1078_RS08030 MATE family efflux transporter + insig.

Or browse nearby genes