Gene info for HMPREF1078_RS07930 in Parabacteroides merdae CL09T00C40

Annotation: efflux RND transporter permease subunit
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH976526, + strand, nucleotides 144,351 to 147,952
See nucleotide sequence around HMPREF1078_RS07930 or for all of scaffold NZ_JH976526

Nearby Genes

500 ntHMPREF1078_RS07900 and HMPREF1078_RS07905 are separated by 232 nucleotidesHMPREF1078_RS07905 and HMPREF1078_RS07910 are separated by 15 nucleotidesHMPREF1078_RS07910 and HMPREF1078_RS07915 are separated by 12 nucleotidesHMPREF1078_RS07915 and HMPREF1078_RS07920 overlap by 4 nucleotidesHMPREF1078_RS07920 and HMPREF1078_RS07930 are separated by 263 nucleotidesHMPREF1078_RS07930 and HMPREF1078_RS07935 are separated by 338 nucleotidesHMPREF1078_RS07935 and HMPREF1078_RS07940 overlap by 34 nucleotidesHMPREF1078_RS07940 and HMPREF1078_RS07945 are separated by 126 nucleotidesHMPREF1078_RS07945 and HMPREF1078_RS07950 are separated by 331 nucleotidesHMPREF1078_RS07950 and HMPREF1078_RS07960 are separated by 757 nucleotides HMPREF1078_RS07900: HMPREF1078_RS07900 - nucleotide exchange factor GrpE, at 137,650 to 138,252 _RS07900 HMPREF1078_RS07905: HMPREF1078_RS07905 - PDZ domain-containing protein, at 138,485 to 139,903 _RS07905 HMPREF1078_RS07910: HMPREF1078_RS07910 - Smr/MutS family protein, at 139,919 to 142,396 _RS07910 HMPREF1078_RS07915: HMPREF1078_RS07915 - magnesium/cobalt transporter CorA, at 142,409 to 143,491 _RS07915 HMPREF1078_RS07920: HMPREF1078_RS07920 - recombinase family protein, at 143,488 to 144,087 _RS07920 HMPREF1078_RS07930: HMPREF1078_RS07930 - efflux RND transporter permease subunit, at 144,351 to 147,952 _RS07930 HMPREF1078_RS07935: HMPREF1078_RS07935 - helicase-related protein, at 148,291 to 150,603 _RS07935 HMPREF1078_RS07940: HMPREF1078_RS07940 - DUF1837 domain-containing protein, at 150,570 to 151,484 _RS07940 HMPREF1078_RS07945: HMPREF1078_RS07945 - MobV family relaxase, at 151,611 to 152,867 _RS07945 HMPREF1078_RS07950: HMPREF1078_RS07950 - toprim domain-containing protein, at 153,199 to 154,143 _RS07950 HMPREF1078_RS07960: HMPREF1078_RS07960 - helix-turn-helix domain-containing protein, at 154,901 to 155,173 _RS07960
Locus Name Description Strand Phenotype
HMPREF1078_RS07900 HMPREF1078_RS07900 nucleotide exchange factor GrpE - no data
HMPREF1078_RS07905 HMPREF1078_RS07905 PDZ domain-containing protein + insig.
HMPREF1078_RS07910 HMPREF1078_RS07910 Smr/MutS family protein + no data
HMPREF1078_RS07915 HMPREF1078_RS07915 magnesium/cobalt transporter CorA + insig.
HMPREF1078_RS07920 HMPREF1078_RS07920 recombinase family protein - sig.
HMPREF1078_RS07930 HMPREF1078_RS07930 efflux RND transporter permease subunit + insig.
HMPREF1078_RS07935 HMPREF1078_RS07935 helicase-related protein - insig.
HMPREF1078_RS07940 HMPREF1078_RS07940 DUF1837 domain-containing protein - insig.
HMPREF1078_RS07945 HMPREF1078_RS07945 MobV family relaxase - insig.
HMPREF1078_RS07950 HMPREF1078_RS07950 toprim domain-containing protein - insig.
HMPREF1078_RS07960 HMPREF1078_RS07960 helix-turn-helix domain-containing protein + insig.

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