Gene info for HMPREF1078_RS07810 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976526, + strand, nucleotides 113,015 to 114,778
See nucleotide sequence around HMPREF1078_RS07810 or for all of scaffold NZ_JH976526

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS07790 and HMPREF1078_RS07795 are separated by 46 nucleotidesHMPREF1078_RS07795 and HMPREF1078_RS19545 are separated by 263 nucleotidesHMPREF1078_RS19545 and HMPREF1078_RS19855 are separated by 231 nucleotidesHMPREF1078_RS19855 and HMPREF1078_RS07805 are separated by 730 nucleotidesHMPREF1078_RS07805 and HMPREF1078_RS07810 are separated by 16 nucleotidesHMPREF1078_RS07810 and HMPREF1078_RS07815 are separated by 534 nucleotidesHMPREF1078_RS07815 and HMPREF1078_RS19555 are separated by 263 nucleotidesHMPREF1078_RS19555 and HMPREF1078_RS07820 are separated by 187 nucleotidesHMPREF1078_RS07820 and HMPREF1078_RS07825 are separated by 31 nucleotidesHMPREF1078_RS07825 and HMPREF1078_RS07830 are separated by 110 nucleotides HMPREF1078_RS07790: HMPREF1078_RS07790 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 102,903 to 104,822 _RS07790 HMPREF1078_RS07795: HMPREF1078_RS07795 - SusC/RagA family TonB-linked outer membrane protein, at 104,869 to 108,042 _RS07795 HMPREF1078_RS19545: HMPREF1078_RS19545 - RagB/SusD family nutrient uptake outer membrane protein, at 108,306 to 108,571 _RS19545 HMPREF1078_RS19855: HMPREF1078_RS19855 - hypothetical protein, at 108,803 to 109,046 _RS19855 HMPREF1078_RS07805: HMPREF1078_RS07805 - TonB-dependent receptor, at 109,777 to 112,998 _RS07805 HMPREF1078_RS07810: HMPREF1078_RS07810 - RagB/SusD family nutrient uptake outer membrane protein, at 113,015 to 114,778 _RS07810 HMPREF1078_RS07815: HMPREF1078_RS07815 - M20/M25/M40 family metallo-hydrolase, at 115,313 to 116,311 _RS07815 HMPREF1078_RS19555: HMPREF1078_RS19555 - hypothetical protein, at 116,575 to 116,733 _RS19555 HMPREF1078_RS07820: HMPREF1078_RS07820 - carbonic anhydrase, at 116,921 to 117,463 _RS07820 HMPREF1078_RS07825: HMPREF1078_RS07825 - Cof-type HAD-IIB family hydrolase, at 117,495 to 118,271 _RS07825 HMPREF1078_RS07830: HMPREF1078_RS07830 - porin, at 118,382 to 119,557 _RS07830
Locus Name Description Strand Phenotype
HMPREF1078_RS07790 HMPREF1078_RS07790 SusD/RagB family nutrient-binding outer membrane lipoprotein - insig.
HMPREF1078_RS07795 HMPREF1078_RS07795 SusC/RagA family TonB-linked outer membrane protein - cofit
HMPREF1078_RS19545 HMPREF1078_RS19545 RagB/SusD family nutrient uptake outer membrane protein + insig.
HMPREF1078_RS19855 HMPREF1078_RS19855 hypothetical protein - insig.
HMPREF1078_RS07805 HMPREF1078_RS07805 TonB-dependent receptor + strong
HMPREF1078_RS07810 HMPREF1078_RS07810 RagB/SusD family nutrient uptake outer membrane protein + strong
HMPREF1078_RS07815 HMPREF1078_RS07815 M20/M25/M40 family metallo-hydrolase - insig.
HMPREF1078_RS19555 HMPREF1078_RS19555 hypothetical protein - sig.
HMPREF1078_RS07820 HMPREF1078_RS07820 carbonic anhydrase - insig.
HMPREF1078_RS07825 HMPREF1078_RS07825 Cof-type HAD-IIB family hydrolase - insig.
HMPREF1078_RS07830 HMPREF1078_RS07830 porin + insig.

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