Gene info for HMPREF1078_RS07740 in Parabacteroides merdae CL09T00C40

Annotation: porin family protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976526, + strand, nucleotides 93,323 to 93,985
See nucleotide sequence around HMPREF1078_RS07740 or for all of scaffold NZ_JH976526

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS07715 and HMPREF1078_RS07720 overlap by 14 nucleotidesHMPREF1078_RS07720 and HMPREF1078_RS07725 are separated by 400 nucleotidesHMPREF1078_RS07725 and HMPREF1078_RS07730 are separated by 9 nucleotidesHMPREF1078_RS07730 and HMPREF1078_RS07735 are separated by 76 nucleotidesHMPREF1078_RS07735 and HMPREF1078_RS07740 overlap by 4 nucleotidesHMPREF1078_RS07740 and HMPREF1078_RS07745 are separated by 282 nucleotidesHMPREF1078_RS07745 and HMPREF1078_RS07750 are separated by 91 nucleotidesHMPREF1078_RS07750 and HMPREF1078_RS07755 are separated by 26 nucleotidesHMPREF1078_RS07755 and HMPREF1078_RS07760 are separated by 66 nucleotidesHMPREF1078_RS07760 and HMPREF1078_RS07765 are separated by 97 nucleotides HMPREF1078_RS07715: HMPREF1078_RS07715 - hypothetical protein, at 85,653 to 86,477 _RS07715 HMPREF1078_RS07720: HMPREF1078_RS07720 - PD-(D/E)XK nuclease family protein, at 86,464 to 87,609 _RS07720 HMPREF1078_RS07725: HMPREF1078_RS07725 - single-stranded-DNA-specific exonuclease RecJ, at 88,010 to 89,734 _RS07725 HMPREF1078_RS07730: HMPREF1078_RS07730 - ATP-dependent DNA helicase RecQ, at 89,744 to 91,444 _RS07730 HMPREF1078_RS07735: HMPREF1078_RS07735 - LysM peptidoglycan-binding domain-containing protein, at 91,521 to 93,326 _RS07735 HMPREF1078_RS07740: HMPREF1078_RS07740 - porin family protein, at 93,323 to 93,985 _RS07740 HMPREF1078_RS07745: HMPREF1078_RS07745 - DUF4293 domain-containing protein, at 94,268 to 94,729 _RS07745 HMPREF1078_RS07750: HMPREF1078_RS07750 - DNA-directed RNA polymerase subunit omega, at 94,821 to 95,153 _RS07750 HMPREF1078_RS07755: HMPREF1078_RS07755 - outer membrane protein assembly factor BamD, at 95,180 to 95,989 _RS07755 HMPREF1078_RS07760: HMPREF1078_RS07760 - hypothetical protein, at 96,056 to 96,481 _RS07760 HMPREF1078_RS07765: HMPREF1078_RS07765 - phenylacetate--CoA ligase, at 96,579 to 97,880 _RS07765
Locus Name Description Strand Phenotype
HMPREF1078_RS07715 HMPREF1078_RS07715 hypothetical protein - insig.
HMPREF1078_RS07720 HMPREF1078_RS07720 PD-(D/E)XK nuclease family protein - insig.
HMPREF1078_RS07725 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ + strong
HMPREF1078_RS07730 HMPREF1078_RS07730 ATP-dependent DNA helicase RecQ + insig.
HMPREF1078_RS07735 HMPREF1078_RS07735 LysM peptidoglycan-binding domain-containing protein + no data
HMPREF1078_RS07740 HMPREF1078_RS07740 porin family protein + strong
HMPREF1078_RS07745 HMPREF1078_RS07745 DUF4293 domain-containing protein - no data
HMPREF1078_RS07750 HMPREF1078_RS07750 DNA-directed RNA polymerase subunit omega - no data
HMPREF1078_RS07755 HMPREF1078_RS07755 outer membrane protein assembly factor BamD - strong
HMPREF1078_RS07760 HMPREF1078_RS07760 hypothetical protein - insig.
HMPREF1078_RS07765 HMPREF1078_RS07765 phenylacetate--CoA ligase - insig.

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