Gene info for HMPREF1078_RS06430 in Parabacteroides merdae CL09T00C40

Annotation: TonB-dependent receptor
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 650,738 to 653,848
See nucleotide sequence around HMPREF1078_RS06430 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS06405 and HMPREF1078_RS06410 are separated by 121 nucleotidesHMPREF1078_RS06410 and HMPREF1078_RS06415 overlap by 11 nucleotidesHMPREF1078_RS06415 and HMPREF1078_RS06420 overlap by 11 nucleotidesHMPREF1078_RS06420 and HMPREF1078_RS06425 are separated by 4 nucleotidesHMPREF1078_RS06425 and HMPREF1078_RS06430 are separated by 414 nucleotidesHMPREF1078_RS06430 and HMPREF1078_RS06435 are separated by 35 nucleotidesHMPREF1078_RS06435 and HMPREF1078_RS06440 are separated by 60 nucleotidesHMPREF1078_RS06440 and HMPREF1078_RS06445 are separated by 69 nucleotidesHMPREF1078_RS06445 and HMPREF1078_RS06450 are separated by 11 nucleotidesHMPREF1078_RS06450 and HMPREF1078_RS06455 are separated by 222 nucleotides HMPREF1078_RS06405: HMPREF1078_RS06405 - DMT family transporter, at 647,449 to 648,351 _RS06405 HMPREF1078_RS06410: HMPREF1078_RS06410 - DUF4252 domain-containing protein, at 648,473 to 648,925 _RS06410 HMPREF1078_RS06415: HMPREF1078_RS06415 - RNA polymerase sigma factor, at 648,915 to 649,433 _RS06415 HMPREF1078_RS06420: HMPREF1078_RS06420 - hypothetical protein, at 649,423 to 649,824 _RS06420 HMPREF1078_RS06425: HMPREF1078_RS06425 - DUF4252 domain-containing protein, at 649,829 to 650,323 _RS06425 HMPREF1078_RS06430: HMPREF1078_RS06430 - TonB-dependent receptor, at 650,738 to 653,848 _RS06430 HMPREF1078_RS06435: HMPREF1078_RS06435 - RagB/SusD family nutrient uptake outer membrane protein, at 653,884 to 655,410 _RS06435 HMPREF1078_RS06440: HMPREF1078_RS06440 - glycosyl hydrolase, at 655,471 to 658,584 _RS06440 HMPREF1078_RS06445: HMPREF1078_RS06445 - family 78 glycoside hydrolase catalytic domain, at 658,654 to 661,449 _RS06445 HMPREF1078_RS06450: HMPREF1078_RS06450 - L-fucose/L-arabinose isomerase family protein, at 661,461 to 662,891 _RS06450 HMPREF1078_RS06455: HMPREF1078_RS06455 - DNA mismatch repair protein MutS, at 663,114 to 665,753 _RS06455
Locus Name Description Strand Phenotype
HMPREF1078_RS06405 HMPREF1078_RS06405 DMT family transporter + insig.
HMPREF1078_RS06410 HMPREF1078_RS06410 DUF4252 domain-containing protein + insig.
HMPREF1078_RS06415 HMPREF1078_RS06415 RNA polymerase sigma factor + insig.
HMPREF1078_RS06420 HMPREF1078_RS06420 hypothetical protein + strong
HMPREF1078_RS06425 HMPREF1078_RS06425 DUF4252 domain-containing protein + strong
HMPREF1078_RS06430 HMPREF1078_RS06430 TonB-dependent receptor + insig.
HMPREF1078_RS06435 HMPREF1078_RS06435 RagB/SusD family nutrient uptake outer membrane protein + insig.
HMPREF1078_RS06440 HMPREF1078_RS06440 glycosyl hydrolase + insig.
HMPREF1078_RS06445 HMPREF1078_RS06445 family 78 glycoside hydrolase catalytic domain + insig.
HMPREF1078_RS06450 HMPREF1078_RS06450 L-fucose/L-arabinose isomerase family protein + insig.
HMPREF1078_RS06455 HMPREF1078_RS06455 DNA mismatch repair protein MutS - cofit

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