Gene info for HMPREF1078_RS06415 in Parabacteroides merdae CL09T00C40

Annotation: RNA polymerase sigma factor
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 648,915 to 649,433
See nucleotide sequence around HMPREF1078_RS06415 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS06390 and HMPREF1078_RS06395 are separated by 2 nucleotidesHMPREF1078_RS06395 and HMPREF1078_RS06400 are separated by 189 nucleotidesHMPREF1078_RS06400 and HMPREF1078_RS06405 are separated by 18 nucleotidesHMPREF1078_RS06405 and HMPREF1078_RS06410 are separated by 121 nucleotidesHMPREF1078_RS06410 and HMPREF1078_RS06415 overlap by 11 nucleotidesHMPREF1078_RS06415 and HMPREF1078_RS06420 overlap by 11 nucleotidesHMPREF1078_RS06420 and HMPREF1078_RS06425 are separated by 4 nucleotidesHMPREF1078_RS06425 and HMPREF1078_RS06430 are separated by 414 nucleotidesHMPREF1078_RS06430 and HMPREF1078_RS06435 are separated by 35 nucleotidesHMPREF1078_RS06435 and HMPREF1078_RS06440 are separated by 60 nucleotides HMPREF1078_RS06390: HMPREF1078_RS06390 - glutaminase A, at 643,601 to 644,566 _RS06390 HMPREF1078_RS06395: HMPREF1078_RS06395 - glutamate decarboxylase, at 644,569 to 646,008 _RS06395 HMPREF1078_RS06400: HMPREF1078_RS06400 - MFS transporter, at 646,198 to 647,430 _RS06400 HMPREF1078_RS06405: HMPREF1078_RS06405 - DMT family transporter, at 647,449 to 648,351 _RS06405 HMPREF1078_RS06410: HMPREF1078_RS06410 - DUF4252 domain-containing protein, at 648,473 to 648,925 _RS06410 HMPREF1078_RS06415: HMPREF1078_RS06415 - RNA polymerase sigma factor, at 648,915 to 649,433 _RS06415 HMPREF1078_RS06420: HMPREF1078_RS06420 - hypothetical protein, at 649,423 to 649,824 _RS06420 HMPREF1078_RS06425: HMPREF1078_RS06425 - DUF4252 domain-containing protein, at 649,829 to 650,323 _RS06425 HMPREF1078_RS06430: HMPREF1078_RS06430 - TonB-dependent receptor, at 650,738 to 653,848 _RS06430 HMPREF1078_RS06435: HMPREF1078_RS06435 - RagB/SusD family nutrient uptake outer membrane protein, at 653,884 to 655,410 _RS06435 HMPREF1078_RS06440: HMPREF1078_RS06440 - glycosyl hydrolase, at 655,471 to 658,584 _RS06440
Locus Name Description Strand Phenotype
HMPREF1078_RS06390 HMPREF1078_RS06390 glutaminase A - insig.
HMPREF1078_RS06395 HMPREF1078_RS06395 glutamate decarboxylase - insig.
HMPREF1078_RS06400 HMPREF1078_RS06400 MFS transporter + insig.
HMPREF1078_RS06405 HMPREF1078_RS06405 DMT family transporter + insig.
HMPREF1078_RS06410 HMPREF1078_RS06410 DUF4252 domain-containing protein + insig.
HMPREF1078_RS06415 HMPREF1078_RS06415 RNA polymerase sigma factor + insig.
HMPREF1078_RS06420 HMPREF1078_RS06420 hypothetical protein + strong
HMPREF1078_RS06425 HMPREF1078_RS06425 DUF4252 domain-containing protein + strong
HMPREF1078_RS06430 HMPREF1078_RS06430 TonB-dependent receptor + insig.
HMPREF1078_RS06435 HMPREF1078_RS06435 RagB/SusD family nutrient uptake outer membrane protein + insig.
HMPREF1078_RS06440 HMPREF1078_RS06440 glycosyl hydrolase + insig.

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