Gene info for HMPREF1078_RS05980 in Parabacteroides merdae CL09T00C40

Annotation: TolC family protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 534,632 to 535,993
See nucleotide sequence around HMPREF1078_RS05980 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05955 and HMPREF1078_RS05960 are separated by 143 nucleotidesHMPREF1078_RS05960 and HMPREF1078_RS05965 are separated by 28 nucleotidesHMPREF1078_RS05965 and HMPREF1078_RS05970 are separated by 16 nucleotidesHMPREF1078_RS05970 and HMPREF1078_RS05975 overlap by 1 nucleotidesHMPREF1078_RS05975 and HMPREF1078_RS05980 are separated by 26 nucleotidesHMPREF1078_RS05980 and HMPREF1078_RS05985 are separated by 419 nucleotidesHMPREF1078_RS05985 and HMPREF1078_RS05990 are separated by 145 nucleotidesHMPREF1078_RS05990 and HMPREF1078_RS05995 are separated by 7 nucleotidesHMPREF1078_RS05995 and HMPREF1078_RS06000 are separated by 124 nucleotidesHMPREF1078_RS06000 and HMPREF1078_RS06005 are separated by 5 nucleotides HMPREF1078_RS05955: HMPREF1078_RS05955 - PaaI family thioesterase, at 527,271 to 527,678 _RS05955 HMPREF1078_RS05960: HMPREF1078_RS05960 - ABC transporter permease, at 527,822 to 530,245 _RS05960 HMPREF1078_RS05965: HMPREF1078_RS05965 - ABC transporter ATP-binding protein, at 530,274 to 530,936 _RS05965 HMPREF1078_RS05970: HMPREF1078_RS05970 - ABC transporter permease, at 530,953 to 533,358 _RS05970 HMPREF1078_RS05975: HMPREF1078_RS05975 - HlyD family efflux transporter periplasmic adaptor subunit, at 533,358 to 534,605 _RS05975 HMPREF1078_RS05980: HMPREF1078_RS05980 - TolC family protein, at 534,632 to 535,993 _RS05980 HMPREF1078_RS05985: HMPREF1078_RS05985 - flavin reductase family protein, at 536,413 to 536,919 _RS05985 HMPREF1078_RS05990: HMPREF1078_RS05990 - alanine/glycine:cation symporter family protein, at 537,065 to 538,465 _RS05990 HMPREF1078_RS05995: HMPREF1078_RS05995 - pitrilysin family protein, at 538,473 to 539,699 _RS05995 HMPREF1078_RS06000: HMPREF1078_RS06000 - SIS domain-containing protein, at 539,824 to 540,441 _RS06000 HMPREF1078_RS06005: HMPREF1078_RS06005 - carbohydrate kinase, at 540,447 to 541,376 _RS06005
Locus Name Description Strand Phenotype
HMPREF1078_RS05955 HMPREF1078_RS05955 PaaI family thioesterase + insig.
HMPREF1078_RS05960 HMPREF1078_RS05960 ABC transporter permease - insig.
HMPREF1078_RS05965 HMPREF1078_RS05965 ABC transporter ATP-binding protein - insig.
HMPREF1078_RS05970 HMPREF1078_RS05970 ABC transporter permease - insig.
HMPREF1078_RS05975 HMPREF1078_RS05975 HlyD family efflux transporter periplasmic adaptor subunit - insig.
HMPREF1078_RS05980 HMPREF1078_RS05980 TolC family protein - insig.
HMPREF1078_RS05985 HMPREF1078_RS05985 flavin reductase family protein - insig.
HMPREF1078_RS05990 HMPREF1078_RS05990 alanine/glycine:cation symporter family protein + insig.
HMPREF1078_RS05995 HMPREF1078_RS05995 pitrilysin family protein - insig.
HMPREF1078_RS06000 HMPREF1078_RS06000 SIS domain-containing protein + no data
HMPREF1078_RS06005 HMPREF1078_RS06005 carbohydrate kinase + insig.

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