Gene info for HMPREF1078_RS05940 in Parabacteroides merdae CL09T00C40

Annotation: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 521,846 to 523,687
See nucleotide sequence around HMPREF1078_RS05940 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05915 and HMPREF1078_RS05920 are separated by 197 nucleotidesHMPREF1078_RS05920 and HMPREF1078_RS05925 are separated by 12 nucleotidesHMPREF1078_RS05925 and HMPREF1078_RS05930 are separated by 16 nucleotidesHMPREF1078_RS05930 and HMPREF1078_RS05935 overlap by 4 nucleotidesHMPREF1078_RS05935 and HMPREF1078_RS05940 are separated by 118 nucleotidesHMPREF1078_RS05940 and HMPREF1078_RS05945 are separated by 101 nucleotidesHMPREF1078_RS05945 and HMPREF1078_RS05950 are separated by 103 nucleotidesHMPREF1078_RS05950 and HMPREF1078_RS05955 are separated by 91 nucleotidesHMPREF1078_RS05955 and HMPREF1078_RS05960 are separated by 143 nucleotidesHMPREF1078_RS05960 and HMPREF1078_RS05965 are separated by 28 nucleotides HMPREF1078_RS05915: HMPREF1078_RS05915 - ATP-binding protein, at 516,365 to 518,527 _RS05915 HMPREF1078_RS05920: HMPREF1078_RS05920 - RNA polymerase factor sigma-54, at 518,725 to 520,194 _RS05920 HMPREF1078_RS05925: HMPREF1078_RS05925 - hypothetical protein, at 520,207 to 520,827 _RS05925 HMPREF1078_RS05930: HMPREF1078_RS05930 - glycine cleavage system protein GcvH, at 520,844 to 521,224 _RS05930 HMPREF1078_RS05935: HMPREF1078_RS05935 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 521,221 to 521,727 _RS05935 HMPREF1078_RS05940: HMPREF1078_RS05940 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 521,846 to 523,687 _RS05940 HMPREF1078_RS05945: HMPREF1078_RS05945 - right-handed parallel beta-helix repeat-containing protein, at 523,789 to 525,597 _RS05945 HMPREF1078_RS05950: HMPREF1078_RS05950 - cysteine--tRNA ligase, at 525,701 to 527,179 _RS05950 HMPREF1078_RS05955: HMPREF1078_RS05955 - PaaI family thioesterase, at 527,271 to 527,678 _RS05955 HMPREF1078_RS05960: HMPREF1078_RS05960 - ABC transporter permease, at 527,822 to 530,245 _RS05960 HMPREF1078_RS05965: HMPREF1078_RS05965 - ABC transporter ATP-binding protein, at 530,274 to 530,936 _RS05965
Locus Name Description Strand Phenotype
HMPREF1078_RS05915 HMPREF1078_RS05915 ATP-binding protein - insig.
HMPREF1078_RS05920 HMPREF1078_RS05920 RNA polymerase factor sigma-54 + cofit
HMPREF1078_RS05925 HMPREF1078_RS05925 hypothetical protein + cofit
HMPREF1078_RS05930 HMPREF1078_RS05930 glycine cleavage system protein GcvH + insig.
HMPREF1078_RS05935 HMPREF1078_RS05935 5-(carboxyamino)imidazole ribonucleotide mutase + strong
HMPREF1078_RS05940 HMPREF1078_RS05940 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase + no data
HMPREF1078_RS05945 HMPREF1078_RS05945 right-handed parallel beta-helix repeat-containing protein - insig.
HMPREF1078_RS05950 HMPREF1078_RS05950 cysteine--tRNA ligase + no data
HMPREF1078_RS05955 HMPREF1078_RS05955 PaaI family thioesterase + insig.
HMPREF1078_RS05960 HMPREF1078_RS05960 ABC transporter permease - insig.
HMPREF1078_RS05965 HMPREF1078_RS05965 ABC transporter ATP-binding protein - insig.

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