Gene info for HMPREF1078_RS05855 in Parabacteroides merdae CL09T00C40

Annotation: tetratricopeptide repeat protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 498,423 to 500,189
See nucleotide sequence around HMPREF1078_RS05855 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05830 and HMPREF1078_RS05835 are separated by 9 nucleotidesHMPREF1078_RS05835 and HMPREF1078_RS05840 are separated by 54 nucleotidesHMPREF1078_RS05840 and HMPREF1078_RS05845 are separated by 56 nucleotidesHMPREF1078_RS05845 and HMPREF1078_RS05850 are separated by 1 nucleotidesHMPREF1078_RS05850 and HMPREF1078_RS05855 overlap by 8 nucleotidesHMPREF1078_RS05855 and HMPREF1078_RS05860 are separated by 39 nucleotidesHMPREF1078_RS05860 and HMPREF1078_RS05865 are separated by 482 nucleotidesHMPREF1078_RS05865 and HMPREF1078_RS05870 are separated by 158 nucleotidesHMPREF1078_RS05870 and HMPREF1078_RS05875 are separated by 139 nucleotidesHMPREF1078_RS05875 and HMPREF1078_RS05880 are separated by 1 nucleotides HMPREF1078_RS05830: HMPREF1078_RS05830 - riboflavin biosynthesis protein RibF, at 492,866 to 493,792 _RS05830 HMPREF1078_RS05835: HMPREF1078_RS05835 - M20 family metallo-hydrolase, at 493,802 to 494,857 _RS05835 HMPREF1078_RS05840: HMPREF1078_RS05840 - lipopolysaccharide biosynthesis protein, at 494,912 to 496,201 _RS05840 HMPREF1078_RS05845: HMPREF1078_RS05845 - peptidoglycan DD-metalloendopeptidase family protein, at 496,258 to 497,589 _RS05845 HMPREF1078_RS05850: HMPREF1078_RS05850 - DUF4292 domain-containing protein, at 497,591 to 498,430 _RS05850 HMPREF1078_RS05855: HMPREF1078_RS05855 - tetratricopeptide repeat protein, at 498,423 to 500,189 _RS05855 HMPREF1078_RS05860: HMPREF1078_RS05860 - dUTP diphosphatase, at 500,229 to 500,660 _RS05860 HMPREF1078_RS05865: HMPREF1078_RS05865 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 501,143 to 503,644 _RS05865 HMPREF1078_RS05870: HMPREF1078_RS05870 - PglZ domain-containing protein, at 503,803 to 505,353 _RS05870 HMPREF1078_RS05875: HMPREF1078_RS05875 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 505,493 to 505,912 _RS05875 HMPREF1078_RS05880: HMPREF1078_RS05880 - immunity 17 family protein, at 505,914 to 506,129 _RS05880
Locus Name Description Strand Phenotype
HMPREF1078_RS05830 HMPREF1078_RS05830 riboflavin biosynthesis protein RibF + no data
HMPREF1078_RS05835 HMPREF1078_RS05835 M20 family metallo-hydrolase + cofit
HMPREF1078_RS05840 HMPREF1078_RS05840 lipopolysaccharide biosynthesis protein + strong
HMPREF1078_RS05845 HMPREF1078_RS05845 peptidoglycan DD-metalloendopeptidase family protein - strong
HMPREF1078_RS05850 HMPREF1078_RS05850 DUF4292 domain-containing protein - no data
HMPREF1078_RS05855 HMPREF1078_RS05855 tetratricopeptide repeat protein - strong
HMPREF1078_RS05860 HMPREF1078_RS05860 dUTP diphosphatase - no data
HMPREF1078_RS05865 HMPREF1078_RS05865 glycoside hydrolase family 2 TIM barrel-domain containing protein - insig.
HMPREF1078_RS05870 HMPREF1078_RS05870 PglZ domain-containing protein + strong
HMPREF1078_RS05875 HMPREF1078_RS05875 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE + no data
HMPREF1078_RS05880 HMPREF1078_RS05880 immunity 17 family protein + insig.

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