Gene info for HMPREF1078_RS05830 in Parabacteroides merdae CL09T00C40

Annotation: riboflavin biosynthesis protein RibF
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 492,866 to 493,792
See nucleotide sequence around HMPREF1078_RS05830 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05805 and HMPREF1078_RS05810 are separated by 32 nucleotidesHMPREF1078_RS05810 and HMPREF1078_RS05815 are separated by 158 nucleotidesHMPREF1078_RS05815 and HMPREF1078_RS05820 are separated by 648 nucleotidesHMPREF1078_RS05820 and HMPREF1078_RS05825 are separated by 27 nucleotidesHMPREF1078_RS05825 and HMPREF1078_RS05830 are separated by 127 nucleotidesHMPREF1078_RS05830 and HMPREF1078_RS05835 are separated by 9 nucleotidesHMPREF1078_RS05835 and HMPREF1078_RS05840 are separated by 54 nucleotidesHMPREF1078_RS05840 and HMPREF1078_RS05845 are separated by 56 nucleotidesHMPREF1078_RS05845 and HMPREF1078_RS05850 are separated by 1 nucleotidesHMPREF1078_RS05850 and HMPREF1078_RS05855 overlap by 8 nucleotides HMPREF1078_RS05805: HMPREF1078_RS05805 - RagB/SusD family nutrient uptake outer membrane protein, at 482,247 to 483,719 _RS05805 HMPREF1078_RS05810: HMPREF1078_RS05810 - TonB-dependent receptor, at 483,752 to 487,231 _RS05810 HMPREF1078_RS05815: HMPREF1078_RS05815 - FecR domain-containing protein, at 487,390 to 488,370 _RS05815 HMPREF1078_RS05820: HMPREF1078_RS05820 - RNA polymerase sigma-70 factor, at 489,019 to 489,561 _RS05820 HMPREF1078_RS05825: HMPREF1078_RS05825 - hypothetical protein, at 489,589 to 492,738 _RS05825 HMPREF1078_RS05830: HMPREF1078_RS05830 - riboflavin biosynthesis protein RibF, at 492,866 to 493,792 _RS05830 HMPREF1078_RS05835: HMPREF1078_RS05835 - M20 family metallo-hydrolase, at 493,802 to 494,857 _RS05835 HMPREF1078_RS05840: HMPREF1078_RS05840 - lipopolysaccharide biosynthesis protein, at 494,912 to 496,201 _RS05840 HMPREF1078_RS05845: HMPREF1078_RS05845 - peptidoglycan DD-metalloendopeptidase family protein, at 496,258 to 497,589 _RS05845 HMPREF1078_RS05850: HMPREF1078_RS05850 - DUF4292 domain-containing protein, at 497,591 to 498,430 _RS05850 HMPREF1078_RS05855: HMPREF1078_RS05855 - tetratricopeptide repeat protein, at 498,423 to 500,189 _RS05855
Locus Name Description Strand Phenotype
HMPREF1078_RS05805 HMPREF1078_RS05805 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS05810 HMPREF1078_RS05810 TonB-dependent receptor - insig.
HMPREF1078_RS05815 HMPREF1078_RS05815 FecR domain-containing protein - insig.
HMPREF1078_RS05820 HMPREF1078_RS05820 RNA polymerase sigma-70 factor - insig.
HMPREF1078_RS05825 HMPREF1078_RS05825 hypothetical protein - insig.
HMPREF1078_RS05830 HMPREF1078_RS05830 riboflavin biosynthesis protein RibF + no data
HMPREF1078_RS05835 HMPREF1078_RS05835 M20 family metallo-hydrolase + cofit
HMPREF1078_RS05840 HMPREF1078_RS05840 lipopolysaccharide biosynthesis protein + strong
HMPREF1078_RS05845 HMPREF1078_RS05845 peptidoglycan DD-metalloendopeptidase family protein - strong
HMPREF1078_RS05850 HMPREF1078_RS05850 DUF4292 domain-containing protein - no data
HMPREF1078_RS05855 HMPREF1078_RS05855 tetratricopeptide repeat protein - strong

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