Gene info for HMPREF1078_RS05780 in Parabacteroides merdae CL09T00C40

Annotation: RNA polymerase sigma-70 factor
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 474,942 to 475,496
See nucleotide sequence around HMPREF1078_RS05780 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05755 and HMPREF1078_RS05760 are separated by 94 nucleotidesHMPREF1078_RS05760 and HMPREF1078_RS05765 are separated by 23 nucleotidesHMPREF1078_RS05765 and HMPREF1078_RS05770 are separated by 366 nucleotidesHMPREF1078_RS05770 and HMPREF1078_RS05775 are separated by 32 nucleotidesHMPREF1078_RS05775 and HMPREF1078_RS05780 are separated by 101 nucleotidesHMPREF1078_RS05780 and HMPREF1078_RS05785 are separated by 134 nucleotidesHMPREF1078_RS05785 and HMPREF1078_RS05790 are separated by 21 nucleotidesHMPREF1078_RS05790 and HMPREF1078_RS05795 overlap by 4 nucleotidesHMPREF1078_RS05795 and HMPREF1078_RS05800 are separated by 1 nucleotidesHMPREF1078_RS05800 and HMPREF1078_RS05805 are separated by 85 nucleotides HMPREF1078_RS05755: HMPREF1078_RS05755 - trehalase family glycosidase, at 465,065 to 466,549 _RS05755 HMPREF1078_RS05760: HMPREF1078_RS05760 - RagB/SusD family nutrient uptake outer membrane protein, at 466,644 to 468,311 _RS05760 HMPREF1078_RS05765: HMPREF1078_RS05765 - TonB-dependent receptor, at 468,335 to 471,502 _RS05765 HMPREF1078_RS05770: HMPREF1078_RS05770 - FecR domain-containing protein, at 471,869 to 472,819 _RS05770 HMPREF1078_RS05775: HMPREF1078_RS05775 - hypothetical protein, at 472,852 to 474,840 _RS05775 HMPREF1078_RS05780: HMPREF1078_RS05780 - RNA polymerase sigma-70 factor, at 474,942 to 475,496 _RS05780 HMPREF1078_RS05785: HMPREF1078_RS05785 - glycoside hydrolase family 31 protein, at 475,631 to 477,226 _RS05785 HMPREF1078_RS05790: HMPREF1078_RS05790 - alpha-N-acetylglucosaminidase, at 477,248 to 479,404 _RS05790 HMPREF1078_RS05795: HMPREF1078_RS05795 - DUF4832 domain-containing protein, at 479,401 to 480,972 _RS05795 HMPREF1078_RS05800: HMPREF1078_RS05800 - family 16 glycosylhydrolase, at 480,974 to 482,161 _RS05800 HMPREF1078_RS05805: HMPREF1078_RS05805 - RagB/SusD family nutrient uptake outer membrane protein, at 482,247 to 483,719 _RS05805
Locus Name Description Strand Phenotype
HMPREF1078_RS05755 HMPREF1078_RS05755 trehalase family glycosidase - insig.
HMPREF1078_RS05760 HMPREF1078_RS05760 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS05765 HMPREF1078_RS05765 TonB-dependent receptor - insig.
HMPREF1078_RS05770 HMPREF1078_RS05770 FecR domain-containing protein - insig.
HMPREF1078_RS05775 HMPREF1078_RS05775 hypothetical protein - insig.
HMPREF1078_RS05780 HMPREF1078_RS05780 RNA polymerase sigma-70 factor - insig.
HMPREF1078_RS05785 HMPREF1078_RS05785 glycoside hydrolase family 31 protein - insig.
HMPREF1078_RS05790 HMPREF1078_RS05790 alpha-N-acetylglucosaminidase - insig.
HMPREF1078_RS05795 HMPREF1078_RS05795 DUF4832 domain-containing protein - insig.
HMPREF1078_RS05800 HMPREF1078_RS05800 family 16 glycosylhydrolase - insig.
HMPREF1078_RS05805 HMPREF1078_RS05805 RagB/SusD family nutrient uptake outer membrane protein - insig.

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