Gene info for HMPREF1078_RS05640 in Parabacteroides merdae CL09T00C40

Annotation: glycoside hydrolase family 88 protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 429,822 to 430,940
See nucleotide sequence around HMPREF1078_RS05640 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05615 and HMPREF1078_RS05620 are separated by 62 nucleotidesHMPREF1078_RS05620 and HMPREF1078_RS05625 are separated by 8 nucleotidesHMPREF1078_RS05625 and HMPREF1078_RS05630 are separated by 133 nucleotidesHMPREF1078_RS05630 and HMPREF1078_RS05635 are separated by 69 nucleotidesHMPREF1078_RS05635 and HMPREF1078_RS05640 are separated by 99 nucleotidesHMPREF1078_RS05640 and HMPREF1078_RS05645 are separated by 9 nucleotidesHMPREF1078_RS05645 and HMPREF1078_RS05650 are separated by 8 nucleotidesHMPREF1078_RS05650 and HMPREF1078_RS05655 are separated by 19 nucleotidesHMPREF1078_RS05655 and HMPREF1078_RS05660 are separated by 194 nucleotidesHMPREF1078_RS05660 and HMPREF1078_RS05665 are separated by 63 nucleotides HMPREF1078_RS05615: HMPREF1078_RS05615 - glucuronate isomerase, at 421,993 to 423,396 _RS05615 HMPREF1078_RS05620: HMPREF1078_RS05620 - tetratricopeptide repeat protein, at 423,459 to 427,052 _RS05620 HMPREF1078_RS05625: HMPREF1078_RS05625 - metal ABC transporter permease, at 427,061 to 427,864 _RS05625 HMPREF1078_RS05630: HMPREF1078_RS05630 - hypothetical protein, at 427,998 to 428,420 _RS05630 HMPREF1078_RS05635: HMPREF1078_RS05635 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 428,490 to 429,722 _RS05635 HMPREF1078_RS05640: HMPREF1078_RS05640 - glycoside hydrolase family 88 protein, at 429,822 to 430,940 _RS05640 HMPREF1078_RS05645: HMPREF1078_RS05645 - hypothetical protein, at 430,950 to 432,692 _RS05645 HMPREF1078_RS05650: HMPREF1078_RS05650 - RagB/SusD family nutrient uptake outer membrane protein, at 432,701 to 434,308 _RS05650 HMPREF1078_RS05655: HMPREF1078_RS05655 - TonB-dependent receptor, at 434,328 to 437,567 _RS05655 HMPREF1078_RS05660: HMPREF1078_RS05660 - DUF4974 domain-containing protein, at 437,762 to 438,745 _RS05660 HMPREF1078_RS05665: HMPREF1078_RS05665 - RNA polymerase sigma-70 factor, at 438,809 to 439,342 _RS05665
Locus Name Description Strand Phenotype
HMPREF1078_RS05615 HMPREF1078_RS05615 glucuronate isomerase + insig.
HMPREF1078_RS05620 HMPREF1078_RS05620 tetratricopeptide repeat protein - strong
HMPREF1078_RS05625 HMPREF1078_RS05625 metal ABC transporter permease - insig.
HMPREF1078_RS05630 HMPREF1078_RS05630 hypothetical protein - no data
HMPREF1078_RS05635 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase - no data
HMPREF1078_RS05640 HMPREF1078_RS05640 glycoside hydrolase family 88 protein - insig.
HMPREF1078_RS05645 HMPREF1078_RS05645 hypothetical protein - insig.
HMPREF1078_RS05650 HMPREF1078_RS05650 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS05655 HMPREF1078_RS05655 TonB-dependent receptor - insig.
HMPREF1078_RS05660 HMPREF1078_RS05660 DUF4974 domain-containing protein - insig.
HMPREF1078_RS05665 HMPREF1078_RS05665 RNA polymerase sigma-70 factor - insig.

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