Gene info for HMPREF1078_RS05620 in Parabacteroides merdae CL09T00C40

Annotation: tetratricopeptide repeat protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 423,459 to 427,052
See nucleotide sequence around HMPREF1078_RS05620 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05595 and HMPREF1078_RS05600 are separated by 10 nucleotidesHMPREF1078_RS05600 and HMPREF1078_RS05605 are separated by 80 nucleotidesHMPREF1078_RS05605 and HMPREF1078_RS05610 are separated by 40 nucleotidesHMPREF1078_RS05610 and HMPREF1078_RS05615 are separated by 82 nucleotidesHMPREF1078_RS05615 and HMPREF1078_RS05620 are separated by 62 nucleotidesHMPREF1078_RS05620 and HMPREF1078_RS05625 are separated by 8 nucleotidesHMPREF1078_RS05625 and HMPREF1078_RS05630 are separated by 133 nucleotidesHMPREF1078_RS05630 and HMPREF1078_RS05635 are separated by 69 nucleotidesHMPREF1078_RS05635 and HMPREF1078_RS05640 are separated by 99 nucleotidesHMPREF1078_RS05640 and HMPREF1078_RS05645 are separated by 9 nucleotides HMPREF1078_RS05595: HMPREF1078_RS05595 - glycoside hydrolase family 95 protein, at 416,090 to 418,624 _RS05595 HMPREF1078_RS05600: HMPREF1078_RS05600 - sulfatase-like hydrolase/transferase, at 418,635 to 420,077 _RS05600 HMPREF1078_RS05605: HMPREF1078_RS05605 - sugar kinase, at 420,158 to 421,201 _RS05605 HMPREF1078_RS05610: HMPREF1078_RS05610 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 421,242 to 421,910 _RS05610 HMPREF1078_RS05615: HMPREF1078_RS05615 - glucuronate isomerase, at 421,993 to 423,396 _RS05615 HMPREF1078_RS05620: HMPREF1078_RS05620 - tetratricopeptide repeat protein, at 423,459 to 427,052 _RS05620 HMPREF1078_RS05625: HMPREF1078_RS05625 - metal ABC transporter permease, at 427,061 to 427,864 _RS05625 HMPREF1078_RS05630: HMPREF1078_RS05630 - hypothetical protein, at 427,998 to 428,420 _RS05630 HMPREF1078_RS05635: HMPREF1078_RS05635 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 428,490 to 429,722 _RS05635 HMPREF1078_RS05640: HMPREF1078_RS05640 - glycoside hydrolase family 88 protein, at 429,822 to 430,940 _RS05640 HMPREF1078_RS05645: HMPREF1078_RS05645 - hypothetical protein, at 430,950 to 432,692 _RS05645
Locus Name Description Strand Phenotype
HMPREF1078_RS05595 HMPREF1078_RS05595 glycoside hydrolase family 95 protein + insig.
HMPREF1078_RS05600 HMPREF1078_RS05600 sulfatase-like hydrolase/transferase + insig.
HMPREF1078_RS05605 HMPREF1078_RS05605 sugar kinase + insig.
HMPREF1078_RS05610 HMPREF1078_RS05610 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase + insig.
HMPREF1078_RS05615 HMPREF1078_RS05615 glucuronate isomerase + insig.
HMPREF1078_RS05620 HMPREF1078_RS05620 tetratricopeptide repeat protein - strong
HMPREF1078_RS05625 HMPREF1078_RS05625 metal ABC transporter permease - insig.
HMPREF1078_RS05630 HMPREF1078_RS05630 hypothetical protein - no data
HMPREF1078_RS05635 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase - no data
HMPREF1078_RS05640 HMPREF1078_RS05640 glycoside hydrolase family 88 protein - insig.
HMPREF1078_RS05645 HMPREF1078_RS05645 hypothetical protein - insig.

Or browse nearby genes

Or see the comparative fitness browser