Gene info for HMPREF1078_RS05590 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 414,299 to 416,002
See nucleotide sequence around HMPREF1078_RS05590 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05565 and HMPREF1078_RS05570 are separated by 12 nucleotidesHMPREF1078_RS05570 and HMPREF1078_RS05575 are separated by 280 nucleotidesHMPREF1078_RS05575 and HMPREF1078_RS05580 are separated by 66 nucleotidesHMPREF1078_RS05580 and HMPREF1078_RS05585 are separated by 238 nucleotidesHMPREF1078_RS05585 and HMPREF1078_RS05590 are separated by 12 nucleotidesHMPREF1078_RS05590 and HMPREF1078_RS05595 are separated by 87 nucleotidesHMPREF1078_RS05595 and HMPREF1078_RS05600 are separated by 10 nucleotidesHMPREF1078_RS05600 and HMPREF1078_RS05605 are separated by 80 nucleotidesHMPREF1078_RS05605 and HMPREF1078_RS05610 are separated by 40 nucleotidesHMPREF1078_RS05610 and HMPREF1078_RS05615 are separated by 82 nucleotides HMPREF1078_RS05565: HMPREF1078_RS05565 - ATP-binding protein, at 406,497 to 407,549 _RS05565 HMPREF1078_RS05570: HMPREF1078_RS05570 - sigma-54 dependent transcriptional regulator, at 407,562 to 408,896 _RS05570 HMPREF1078_RS05575: HMPREF1078_RS05575 - RNA polymerase sigma-70 factor, at 409,177 to 409,731 _RS05575 HMPREF1078_RS05580: HMPREF1078_RS05580 - FecR family protein, at 409,798 to 410,790 _RS05580 HMPREF1078_RS05585: HMPREF1078_RS05585 - TonB-dependent receptor, at 411,029 to 414,286 _RS05585 HMPREF1078_RS05590: HMPREF1078_RS05590 - RagB/SusD family nutrient uptake outer membrane protein, at 414,299 to 416,002 _RS05590 HMPREF1078_RS05595: HMPREF1078_RS05595 - glycoside hydrolase family 95 protein, at 416,090 to 418,624 _RS05595 HMPREF1078_RS05600: HMPREF1078_RS05600 - sulfatase-like hydrolase/transferase, at 418,635 to 420,077 _RS05600 HMPREF1078_RS05605: HMPREF1078_RS05605 - sugar kinase, at 420,158 to 421,201 _RS05605 HMPREF1078_RS05610: HMPREF1078_RS05610 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 421,242 to 421,910 _RS05610 HMPREF1078_RS05615: HMPREF1078_RS05615 - glucuronate isomerase, at 421,993 to 423,396 _RS05615
Locus Name Description Strand Phenotype
HMPREF1078_RS05565 HMPREF1078_RS05565 ATP-binding protein - insig.
HMPREF1078_RS05570 HMPREF1078_RS05570 sigma-54 dependent transcriptional regulator - insig.
HMPREF1078_RS05575 HMPREF1078_RS05575 RNA polymerase sigma-70 factor + insig.
HMPREF1078_RS05580 HMPREF1078_RS05580 FecR family protein + insig.
HMPREF1078_RS05585 HMPREF1078_RS05585 TonB-dependent receptor + insig.
HMPREF1078_RS05590 HMPREF1078_RS05590 RagB/SusD family nutrient uptake outer membrane protein + insig.
HMPREF1078_RS05595 HMPREF1078_RS05595 glycoside hydrolase family 95 protein + insig.
HMPREF1078_RS05600 HMPREF1078_RS05600 sulfatase-like hydrolase/transferase + insig.
HMPREF1078_RS05605 HMPREF1078_RS05605 sugar kinase + insig.
HMPREF1078_RS05610 HMPREF1078_RS05610 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase + insig.
HMPREF1078_RS05615 HMPREF1078_RS05615 glucuronate isomerase + insig.

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