Gene info for HMPREF1078_RS05555 in Parabacteroides merdae CL09T00C40

Annotation: Ig-like domain-containing protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 403,751 to 405,667
See nucleotide sequence around HMPREF1078_RS05555 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05530 and HMPREF1078_RS05535 are separated by 3 nucleotidesHMPREF1078_RS05535 and HMPREF1078_RS05540 are separated by 10 nucleotidesHMPREF1078_RS05540 and HMPREF1078_RS05545 are separated by 16 nucleotidesHMPREF1078_RS05545 and HMPREF1078_RS05550 are separated by 111 nucleotidesHMPREF1078_RS05550 and HMPREF1078_RS05555 are separated by 98 nucleotidesHMPREF1078_RS05555 and HMPREF1078_RS05560 overlap by 62 nucleotidesHMPREF1078_RS05560 and HMPREF1078_RS05565 are separated by 3 nucleotidesHMPREF1078_RS05565 and HMPREF1078_RS05570 are separated by 12 nucleotidesHMPREF1078_RS05570 and HMPREF1078_RS05575 are separated by 280 nucleotidesHMPREF1078_RS05575 and HMPREF1078_RS05580 are separated by 66 nucleotides HMPREF1078_RS05530: HMPREF1078_RS05530 - WbqC family protein, at 398,587 to 399,222 _RS05530 HMPREF1078_RS05535: HMPREF1078_RS05535 - signal peptidase I, at 399,226 to 400,116 _RS05535 HMPREF1078_RS05540: HMPREF1078_RS05540 - signal peptidase I, at 400,127 to 401,524 _RS05540 HMPREF1078_RS05545: HMPREF1078_RS05545 - 4-hydroxy-tetrahydrodipicolinate reductase, at 401,541 to 402,257 _RS05545 HMPREF1078_RS05550: HMPREF1078_RS05550 - DUF2851 family protein, at 402,369 to 403,652 _RS05550 HMPREF1078_RS05555: HMPREF1078_RS05555 - Ig-like domain-containing protein, at 403,751 to 405,667 _RS05555 HMPREF1078_RS05560: HMPREF1078_RS05560 - DUF3108 domain-containing protein, at 405,606 to 406,493 _RS05560 HMPREF1078_RS05565: HMPREF1078_RS05565 - ATP-binding protein, at 406,497 to 407,549 _RS05565 HMPREF1078_RS05570: HMPREF1078_RS05570 - sigma-54 dependent transcriptional regulator, at 407,562 to 408,896 _RS05570 HMPREF1078_RS05575: HMPREF1078_RS05575 - RNA polymerase sigma-70 factor, at 409,177 to 409,731 _RS05575 HMPREF1078_RS05580: HMPREF1078_RS05580 - FecR family protein, at 409,798 to 410,790 _RS05580
Locus Name Description Strand Phenotype
HMPREF1078_RS05530 HMPREF1078_RS05530 WbqC family protein - cofit
HMPREF1078_RS05535 HMPREF1078_RS05535 signal peptidase I - cofit
HMPREF1078_RS05540 HMPREF1078_RS05540 signal peptidase I - no data
HMPREF1078_RS05545 HMPREF1078_RS05545 4-hydroxy-tetrahydrodipicolinate reductase - strong
HMPREF1078_RS05550 HMPREF1078_RS05550 DUF2851 family protein + insig.
HMPREF1078_RS05555 HMPREF1078_RS05555 Ig-like domain-containing protein + no data
HMPREF1078_RS05560 HMPREF1078_RS05560 DUF3108 domain-containing protein + strong
HMPREF1078_RS05565 HMPREF1078_RS05565 ATP-binding protein - insig.
HMPREF1078_RS05570 HMPREF1078_RS05570 sigma-54 dependent transcriptional regulator - insig.
HMPREF1078_RS05575 HMPREF1078_RS05575 RNA polymerase sigma-70 factor + insig.
HMPREF1078_RS05580 HMPREF1078_RS05580 FecR family protein + sig.

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