Gene info for HMPREF1078_RS05400 in Parabacteroides merdae CL09T00C40

Annotation: TonB-dependent receptor
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 355,259 to 358,540
See nucleotide sequence around HMPREF1078_RS05400 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05375 and HMPREF1078_RS05380 are separated by 273 nucleotidesHMPREF1078_RS05380 and HMPREF1078_RS05385 are separated by 27 nucleotidesHMPREF1078_RS05385 and HMPREF1078_RS05390 are separated by 38 nucleotidesHMPREF1078_RS05390 and HMPREF1078_RS05395 are separated by 259 nucleotidesHMPREF1078_RS05395 and HMPREF1078_RS05400 are separated by 979 nucleotidesHMPREF1078_RS05400 and HMPREF1078_RS05405 are separated by 16 nucleotidesHMPREF1078_RS05405 and HMPREF1078_RS05410 are separated by 200 nucleotidesHMPREF1078_RS05410 and HMPREF1078_RS05415 overlap by 4 nucleotidesHMPREF1078_RS05415 and HMPREF1078_RS05420 are separated by 4 nucleotidesHMPREF1078_RS05420 and HMPREF1078_RS18510 are separated by 69 nucleotides HMPREF1078_RS05375: HMPREF1078_RS05375 - tRNA dihydrouridine synthase DusB, at 348,322 to 349,353 _RS05375 HMPREF1078_RS05380: HMPREF1078_RS05380 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 349,627 to 350,382 _RS05380 HMPREF1078_RS05385: HMPREF1078_RS05385 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 350,410 to 352,353 _RS05385 HMPREF1078_RS05390: HMPREF1078_RS05390 - succinate dehydrogenase cytochrome b subunit, at 352,392 to 353,066 _RS05390 HMPREF1078_RS05395: HMPREF1078_RS05395 - PmoA family protein, at 353,326 to 354,279 _RS05395 HMPREF1078_RS05400: HMPREF1078_RS05400 - TonB-dependent receptor, at 355,259 to 358,540 _RS05400 HMPREF1078_RS05405: HMPREF1078_RS05405 - RagB/SusD family nutrient uptake outer membrane protein, at 358,557 to 360,410 _RS05405 HMPREF1078_RS05410: HMPREF1078_RS05410 - DUF6057 family protein, at 360,611 to 362,371 _RS05410 HMPREF1078_RS05415: HMPREF1078_RS05415 - PD40 domain-containing protein, at 362,368 to 363,822 _RS05415 HMPREF1078_RS05420: HMPREF1078_RS05420 - alpha-L-fucosidase, at 363,827 to 365,881 _RS05420 HMPREF1078_RS18510: HMPREF1078_RS18510 - transposase, at 365,951 to 366,263 _RS18510
Locus Name Description Strand Phenotype
HMPREF1078_RS05375 HMPREF1078_RS05375 tRNA dihydrouridine synthase DusB + cofit
HMPREF1078_RS05380 HMPREF1078_RS05380 succinate dehydrogenase/fumarate reductase iron-sulfur subunit - no data
HMPREF1078_RS05385 HMPREF1078_RS05385 fumarate reductase/succinate dehydrogenase flavoprotein subunit - no data
HMPREF1078_RS05390 HMPREF1078_RS05390 succinate dehydrogenase cytochrome b subunit - no data
HMPREF1078_RS05395 HMPREF1078_RS05395 PmoA family protein + insig.
HMPREF1078_RS05400 HMPREF1078_RS05400 TonB-dependent receptor + cofit
HMPREF1078_RS05405 HMPREF1078_RS05405 RagB/SusD family nutrient uptake outer membrane protein + cofit
HMPREF1078_RS05410 HMPREF1078_RS05410 DUF6057 family protein + cofit
HMPREF1078_RS05415 HMPREF1078_RS05415 PD40 domain-containing protein + cofit
HMPREF1078_RS05420 HMPREF1078_RS05420 alpha-L-fucosidase + insig.
HMPREF1078_RS18510 HMPREF1078_RS18510 transposase + insig.

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