Gene info for HMPREF1078_RS05280 in Parabacteroides merdae CL09T00C40

Annotation: helix-turn-helix transcriptional regulator
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 326,742 to 326,954
See nucleotide sequence around HMPREF1078_RS05280 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS05260 and HMPREF1078_RS05265 overlap by 1 nucleotidesHMPREF1078_RS05265 and HMPREF1078_RS18495 are separated by 276 nucleotidesHMPREF1078_RS18495 and HMPREF1078_RS05270 are separated by 243 nucleotidesHMPREF1078_RS05270 and HMPREF1078_RS05275 are separated by 140 nucleotidesHMPREF1078_RS05275 and HMPREF1078_RS05280 are separated by 189 nucleotidesHMPREF1078_RS05280 and HMPREF1078_RS05285 are separated by 316 nucleotidesHMPREF1078_RS05285 and HMPREF1078_RS05290 are separated by 56 nucleotidesHMPREF1078_RS05290 and HMPREF1078_RS05295 are separated by 465 nucleotidesHMPREF1078_RS05295 and HMPREF1078_RS05300 are separated by 15 nucleotidesHMPREF1078_RS05300 and HMPREF1078_RS05305 are separated by 169 nucleotides HMPREF1078_RS05260: HMPREF1078_RS05260 - dTDP-4-dehydrorhamnose reductase, at 321,734 to 322,624 _RS05260 HMPREF1078_RS05265: HMPREF1078_RS05265 - DcaP family trimeric outer membrane transporter, at 322,624 to 323,844 _RS05265 HMPREF1078_RS18495: HMPREF1078_RS18495 - hypothetical protein, at 324,121 to 324,393 _RS18495 HMPREF1078_RS05270: HMPREF1078_RS05270 - TrpB-like pyridoxal phosphate-dependent enzyme, at 324,637 to 326,001 _RS05270 HMPREF1078_RS05275: HMPREF1078_RS05275 - DUF3836 domain-containing protein, at 326,142 to 326,552 _RS05275 HMPREF1078_RS05280: HMPREF1078_RS05280 - helix-turn-helix transcriptional regulator, at 326,742 to 326,954 _RS05280 HMPREF1078_RS05285: HMPREF1078_RS05285 - DUF2975 domain-containing protein, at 327,271 to 327,936 _RS05285 HMPREF1078_RS05290: HMPREF1078_RS05290 - signal peptide peptidase SppA, at 327,993 to 329,768 _RS05290 HMPREF1078_RS05295: HMPREF1078_RS05295 - DUF2461 domain-containing protein, at 330,234 to 330,908 _RS05295 HMPREF1078_RS05300: HMPREF1078_RS05300 - patatin-like phospholipase family protein, at 330,924 to 333,134 _RS05300 HMPREF1078_RS05305: HMPREF1078_RS05305 - hypothetical protein, at 333,304 to 333,882 _RS05305
Locus Name Description Strand Phenotype
HMPREF1078_RS05260 HMPREF1078_RS05260 dTDP-4-dehydrorhamnose reductase - insig.
HMPREF1078_RS05265 HMPREF1078_RS05265 DcaP family trimeric outer membrane transporter - cofit
HMPREF1078_RS18495 HMPREF1078_RS18495 hypothetical protein - insig.
HMPREF1078_RS05270 HMPREF1078_RS05270 TrpB-like pyridoxal phosphate-dependent enzyme + insig.
HMPREF1078_RS05275 HMPREF1078_RS05275 DUF3836 domain-containing protein - insig.
HMPREF1078_RS05280 HMPREF1078_RS05280 helix-turn-helix transcriptional regulator - strong
HMPREF1078_RS05285 HMPREF1078_RS05285 DUF2975 domain-containing protein - strong
HMPREF1078_RS05290 HMPREF1078_RS05290 signal peptide peptidase SppA - cofit
HMPREF1078_RS05295 HMPREF1078_RS05295 DUF2461 domain-containing protein - sig.
HMPREF1078_RS05300 HMPREF1078_RS05300 patatin-like phospholipase family protein - insig.
HMPREF1078_RS05305 HMPREF1078_RS05305 hypothetical protein - insig.

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