Gene info for HMPREF1078_RS04995 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 254,581 to 256,263
See nucleotide sequence around HMPREF1078_RS04995 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS04975 and HMPREF1078_RS04980 overlap by 4 nucleotidesHMPREF1078_RS04980 and HMPREF1078_RS19770 overlap by 13 nucleotidesHMPREF1078_RS19770 and HMPREF1078_RS19335 are separated by 19 nucleotidesHMPREF1078_RS19335 and HMPREF1078_RS04985 overlap by 32 nucleotidesHMPREF1078_RS04985 and HMPREF1078_RS04995 are separated by 700 nucleotidesHMPREF1078_RS04995 and HMPREF1078_RS05000 are separated by 10 nucleotidesHMPREF1078_RS05000 and HMPREF1078_RS05005 are separated by 147 nucleotidesHMPREF1078_RS05005 and HMPREF1078_RS05010 are separated by 68 nucleotidesHMPREF1078_RS05010 and HMPREF1078_RS05015 are separated by 592 nucleotidesHMPREF1078_RS05015 and HMPREF1078_RS05020 are separated by 73 nucleotides HMPREF1078_RS04975: HMPREF1078_RS04975 - IS1595 family transposase, at 252,027 to 252,944 _RS04975 HMPREF1078_RS04980: HMPREF1078_RS04980 - hypothetical protein, at 252,941 to 253,246 _RS04980 HMPREF1078_RS19770: HMPREF1078_RS19770 - hypothetical protein, at 253,234 to 253,401 _RS19770 HMPREF1078_RS19335: HMPREF1078_RS19335 - hypothetical protein, at 253,421 to 253,654 _RS19335 HMPREF1078_RS04985: HMPREF1078_RS04985 - hypothetical protein, at 253,623 to 253,880 _RS04985 HMPREF1078_RS04995: HMPREF1078_RS04995 - RagB/SusD family nutrient uptake outer membrane protein, at 254,581 to 256,263 _RS04995 HMPREF1078_RS05000: HMPREF1078_RS05000 - TonB-dependent receptor, at 256,274 to 259,708 _RS05000 HMPREF1078_RS05005: HMPREF1078_RS05005 - FecR domain-containing protein, at 259,856 to 260,839 _RS05005 HMPREF1078_RS05010: HMPREF1078_RS05010 - RNA polymerase sigma-70 factor, at 260,908 to 261,477 _RS05010 HMPREF1078_RS05015: HMPREF1078_RS05015 - PfkB family carbohydrate kinase, at 262,070 to 262,951 _RS05015 HMPREF1078_RS05020: HMPREF1078_RS05020 - sugar MFS transporter, at 263,025 to 264,236 _RS05020
Locus Name Description Strand Phenotype
HMPREF1078_RS04975 HMPREF1078_RS04975 IS1595 family transposase + insig.
HMPREF1078_RS04980 HMPREF1078_RS04980 hypothetical protein + strong
HMPREF1078_RS19770 HMPREF1078_RS19770 hypothetical protein - sig.
HMPREF1078_RS19335 HMPREF1078_RS19335 hypothetical protein + insig.
HMPREF1078_RS04985 HMPREF1078_RS04985 hypothetical protein - insig.
HMPREF1078_RS04995 HMPREF1078_RS04995 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS05000 HMPREF1078_RS05000 TonB-dependent receptor - insig.
HMPREF1078_RS05005 HMPREF1078_RS05005 FecR domain-containing protein - insig.
HMPREF1078_RS05010 HMPREF1078_RS05010 RNA polymerase sigma-70 factor - insig.
HMPREF1078_RS05015 HMPREF1078_RS05015 PfkB family carbohydrate kinase + insig.
HMPREF1078_RS05020 HMPREF1078_RS05020 sugar MFS transporter - cofit

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