Gene info for HMPREF1078_RS04835 in Parabacteroides merdae CL09T00C40

Annotation: DUF6080 domain-containing protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 215,868 to 217,148
See nucleotide sequence around HMPREF1078_RS04835 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS04810 and HMPREF1078_RS04815 are separated by 199 nucleotidesHMPREF1078_RS04815 and HMPREF1078_RS04820 are separated by 33 nucleotidesHMPREF1078_RS04820 and HMPREF1078_RS04825 are separated by 127 nucleotidesHMPREF1078_RS04825 and HMPREF1078_RS04830 are separated by 1 nucleotidesHMPREF1078_RS04830 and HMPREF1078_RS04835 are separated by 9 nucleotidesHMPREF1078_RS04835 and HMPREF1078_RS04840 overlap by 12 nucleotidesHMPREF1078_RS04840 and HMPREF1078_RS04845 are separated by 14 nucleotidesHMPREF1078_RS04845 and HMPREF1078_RS04850 are separated by 3 nucleotidesHMPREF1078_RS04850 and HMPREF1078_RS04865 are separated by 1100 nucleotidesHMPREF1078_RS04865 and HMPREF1078_RS04870 are separated by 667 nucleotides HMPREF1078_RS04810: HMPREF1078_RS04810 - translation initiation factor, at 212,019 to 212,363 _RS04810 HMPREF1078_RS04815: HMPREF1078_RS04815 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 212,563 to 213,039 _RS04815 HMPREF1078_RS04820: HMPREF1078_RS04820 - type IX secretion system outer membrane channel protein PorV, at 213,073 to 214,239 _RS04820 HMPREF1078_RS04825: HMPREF1078_RS04825 - decaprenyl-phosphate phosphoribosyltransferase, at 214,367 to 215,263 _RS04825 HMPREF1078_RS04830: HMPREF1078_RS04830 - HAD-IB family hydrolase, at 215,265 to 215,858 _RS04830 HMPREF1078_RS04835: HMPREF1078_RS04835 - DUF6080 domain-containing protein, at 215,868 to 217,148 _RS04835 HMPREF1078_RS04840: HMPREF1078_RS04840 - type IX secretion system sortase PorU, at 217,137 to 220,502 _RS04840 HMPREF1078_RS04845: HMPREF1078_RS04845 - fumarylacetoacetate hydrolase family protein, at 220,517 to 221,131 _RS04845 HMPREF1078_RS04850: HMPREF1078_RS04850 - redox-sensing transcriptional repressor Rex, at 221,135 to 221,785 _RS04850 HMPREF1078_RS04865: HMPREF1078_RS04865 - DUF6383 domain-containing protein, at 222,886 to 226,296 _RS04865 HMPREF1078_RS04870: HMPREF1078_RS04870 - aminoacyl-histidine dipeptidase, at 226,964 to 228,418 _RS04870
Locus Name Description Strand Phenotype
HMPREF1078_RS04810 HMPREF1078_RS04810 translation initiation factor - no data
HMPREF1078_RS04815 HMPREF1078_RS04815 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase - no data
HMPREF1078_RS04820 HMPREF1078_RS04820 type IX secretion system outer membrane channel protein PorV - strong
HMPREF1078_RS04825 HMPREF1078_RS04825 decaprenyl-phosphate phosphoribosyltransferase + strong
HMPREF1078_RS04830 HMPREF1078_RS04830 HAD-IB family hydrolase + insig.
HMPREF1078_RS04835 HMPREF1078_RS04835 DUF6080 domain-containing protein + cofit
HMPREF1078_RS04840 HMPREF1078_RS04840 type IX secretion system sortase PorU - strong
HMPREF1078_RS04845 HMPREF1078_RS04845 fumarylacetoacetate hydrolase family protein - sig.
HMPREF1078_RS04850 HMPREF1078_RS04850 redox-sensing transcriptional repressor Rex - insig.
HMPREF1078_RS04865 HMPREF1078_RS04865 DUF6383 domain-containing protein - insig.
HMPREF1078_RS04870 HMPREF1078_RS04870 aminoacyl-histidine dipeptidase - strong

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