Gene info for HMPREF1078_RS04735 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 195,311 to 196,792
See nucleotide sequence around HMPREF1078_RS04735 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS04710 and HMPREF1078_RS04715 overlap by 4 nucleotidesHMPREF1078_RS04715 and HMPREF1078_RS04720 are separated by 72 nucleotidesHMPREF1078_RS04720 and HMPREF1078_RS04725 are separated by 85 nucleotidesHMPREF1078_RS04725 and HMPREF1078_RS04730 are separated by 144 nucleotidesHMPREF1078_RS04730 and HMPREF1078_RS04735 are separated by 12 nucleotidesHMPREF1078_RS04735 and HMPREF1078_RS04740 are separated by 17 nucleotidesHMPREF1078_RS04740 and HMPREF1078_RS04745 are separated by 213 nucleotidesHMPREF1078_RS04745 and HMPREF1078_RS04750 are separated by 213 nucleotidesHMPREF1078_RS04750 and HMPREF1078_RS04755 are separated by 153 nucleotidesHMPREF1078_RS04755 and HMPREF1078_RS04760 are separated by 33 nucleotides HMPREF1078_RS04710: HMPREF1078_RS04710 - DUF4954 family protein, at 185,977 to 187,971 _RS04710 HMPREF1078_RS04715: HMPREF1078_RS04715 - GTPase HflX, at 187,968 to 189,179 _RS04715 HMPREF1078_RS04720: HMPREF1078_RS04720 - T9SS type A sorting domain-containing protein, at 189,252 to 190,991 _RS04720 HMPREF1078_RS04725: HMPREF1078_RS04725 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 191,077 to 193,774 _RS04725 HMPREF1078_RS04730: HMPREF1078_RS04730 - FAD-dependent oxidoreductase, at 193,919 to 195,298 _RS04730 HMPREF1078_RS04735: HMPREF1078_RS04735 - RagB/SusD family nutrient uptake outer membrane protein, at 195,311 to 196,792 _RS04735 HMPREF1078_RS04740: HMPREF1078_RS04740 - TonB-dependent receptor, at 196,810 to 200,121 _RS04740 HMPREF1078_RS04745: HMPREF1078_RS04745 - FecR domain-containing protein, at 200,335 to 201,276 _RS04745 HMPREF1078_RS04750: HMPREF1078_RS04750 - RNA polymerase sigma-70 factor, at 201,490 to 202,059 _RS04750 HMPREF1078_RS04755: HMPREF1078_RS04755 - hypothetical protein, at 202,213 to 202,422 _RS04755 HMPREF1078_RS04760: HMPREF1078_RS04760 - GH92 family glycosyl hydrolase, at 202,456 to 204,663 _RS04760
Locus Name Description Strand Phenotype
HMPREF1078_RS04710 HMPREF1078_RS04710 DUF4954 family protein - strong
HMPREF1078_RS04715 HMPREF1078_RS04715 GTPase HflX - strong
HMPREF1078_RS04720 HMPREF1078_RS04720 T9SS type A sorting domain-containing protein + insig.
HMPREF1078_RS04725 HMPREF1078_RS04725 glycoside hydrolase family 2 TIM barrel-domain containing protein - insig.
HMPREF1078_RS04730 HMPREF1078_RS04730 FAD-dependent oxidoreductase - insig.
HMPREF1078_RS04735 HMPREF1078_RS04735 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS04740 HMPREF1078_RS04740 TonB-dependent receptor - insig.
HMPREF1078_RS04745 HMPREF1078_RS04745 FecR domain-containing protein - insig.
HMPREF1078_RS04750 HMPREF1078_RS04750 RNA polymerase sigma-70 factor - insig.
HMPREF1078_RS04755 HMPREF1078_RS04755 hypothetical protein + insig.
HMPREF1078_RS04760 HMPREF1078_RS04760 GH92 family glycosyl hydrolase + insig.

Or browse nearby genes

Or see the comparative fitness browser