Gene info for HMPREF1078_RS04705 in Parabacteroides merdae CL09T00C40

Annotation: site-specific tyrosine recombinase XerD
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 185,075 to 185,980
See nucleotide sequence around HMPREF1078_RS04705 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS04680 and HMPREF1078_RS04685 are separated by 12 nucleotidesHMPREF1078_RS04685 and HMPREF1078_RS04690 are separated by 14 nucleotidesHMPREF1078_RS04690 and HMPREF1078_RS04695 are separated by 91 nucleotidesHMPREF1078_RS04695 and HMPREF1078_RS04700 are separated by 140 nucleotidesHMPREF1078_RS04700 and HMPREF1078_RS04705 are separated by 216 nucleotidesHMPREF1078_RS04705 and HMPREF1078_RS04710 overlap by 4 nucleotidesHMPREF1078_RS04710 and HMPREF1078_RS04715 overlap by 4 nucleotidesHMPREF1078_RS04715 and HMPREF1078_RS04720 are separated by 72 nucleotidesHMPREF1078_RS04720 and HMPREF1078_RS04725 are separated by 85 nucleotidesHMPREF1078_RS04725 and HMPREF1078_RS04730 are separated by 144 nucleotides HMPREF1078_RS04680: HMPREF1078_RS04680 - FtsX-like permease family protein, at 180,519 to 181,754 _RS04680 HMPREF1078_RS04685: HMPREF1078_RS04685 - 30S ribosome-binding factor RbfA, at 181,767 to 182,102 _RS04685 HMPREF1078_RS04690: HMPREF1078_RS04690 - O-methyltransferase, at 182,117 to 182,740 _RS04690 HMPREF1078_RS04695: HMPREF1078_RS04695 - pyruvate kinase, at 182,832 to 184,283 _RS04695 HMPREF1078_RS04700: HMPREF1078_RS04700 - type II 3-dehydroquinate dehydratase, at 184,424 to 184,858 _RS04700 HMPREF1078_RS04705: HMPREF1078_RS04705 - site-specific tyrosine recombinase XerD, at 185,075 to 185,980 _RS04705 HMPREF1078_RS04710: HMPREF1078_RS04710 - DUF4954 family protein, at 185,977 to 187,971 _RS04710 HMPREF1078_RS04715: HMPREF1078_RS04715 - GTPase HflX, at 187,968 to 189,179 _RS04715 HMPREF1078_RS04720: HMPREF1078_RS04720 - T9SS type A sorting domain-containing protein, at 189,252 to 190,991 _RS04720 HMPREF1078_RS04725: HMPREF1078_RS04725 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 191,077 to 193,774 _RS04725 HMPREF1078_RS04730: HMPREF1078_RS04730 - FAD-dependent oxidoreductase, at 193,919 to 195,298 _RS04730
Locus Name Description Strand Phenotype
HMPREF1078_RS04680 HMPREF1078_RS04680 FtsX-like permease family protein - no data
HMPREF1078_RS04685 HMPREF1078_RS04685 30S ribosome-binding factor RbfA - cofit
HMPREF1078_RS04690 HMPREF1078_RS04690 O-methyltransferase - cofit
HMPREF1078_RS04695 HMPREF1078_RS04695 pyruvate kinase - sig.
HMPREF1078_RS04700 HMPREF1078_RS04700 type II 3-dehydroquinate dehydratase - strong
HMPREF1078_RS04705 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD + strong
HMPREF1078_RS04710 HMPREF1078_RS04710 DUF4954 family protein - strong
HMPREF1078_RS04715 HMPREF1078_RS04715 GTPase HflX - strong
HMPREF1078_RS04720 HMPREF1078_RS04720 T9SS type A sorting domain-containing protein + insig.
HMPREF1078_RS04725 HMPREF1078_RS04725 glycoside hydrolase family 2 TIM barrel-domain containing protein - insig.
HMPREF1078_RS04730 HMPREF1078_RS04730 FAD-dependent oxidoreductase - insig.

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