Gene info for HMPREF1078_RS04400 in Parabacteroides merdae CL09T00C40

Annotation: alanine--tRNA ligase
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 109,476 to 112,103
See nucleotide sequence around HMPREF1078_RS04400 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS04375 and HMPREF1078_RS20090 are separated by 288 nucleotidesHMPREF1078_RS20090 and HMPREF1078_RS04385 are separated by 285 nucleotidesHMPREF1078_RS04385 and HMPREF1078_RS04390 are separated by 59 nucleotidesHMPREF1078_RS04390 and HMPREF1078_RS04395 are separated by 36 nucleotidesHMPREF1078_RS04395 and HMPREF1078_RS04400 are separated by 170 nucleotidesHMPREF1078_RS04400 and HMPREF1078_RS04405 are separated by 97 nucleotidesHMPREF1078_RS04405 and HMPREF1078_RS04410 are separated by 15 nucleotidesHMPREF1078_RS04410 and HMPREF1078_RS04415 are separated by 87 nucleotidesHMPREF1078_RS04415 and HMPREF1078_RS04420 are separated by 94 nucleotidesHMPREF1078_RS04420 and HMPREF1078_RS04425 are separated by 85 nucleotides HMPREF1078_RS04375: HMPREF1078_RS04375 - hypothetical protein, at 106,549 to 106,812 _RS04375 HMPREF1078_RS20090: HMPREF1078_RS20090 - response regulator, at 107,101 to 107,491 _RS20090 HMPREF1078_RS04385: HMPREF1078_RS04385 - HU family DNA-binding protein, at 107,777 to 108,070 _RS04385 HMPREF1078_RS04390: HMPREF1078_RS04390 - tRNA-Pro, at 108,130 to 108,204 _RS04390 HMPREF1078_RS04395: HMPREF1078_RS04395 - 3-dehydroquinate synthase, at 108,241 to 109,305 _RS04395 HMPREF1078_RS04400: HMPREF1078_RS04400 - alanine--tRNA ligase, at 109,476 to 112,103 _RS04400 HMPREF1078_RS04405: HMPREF1078_RS04405 - M23 family metallopeptidase, at 112,201 to 113,184 _RS04405 HMPREF1078_RS04410: HMPREF1078_RS04410 - MerR family transcriptional regulator, at 113,200 to 113,556 _RS04410 HMPREF1078_RS04415: HMPREF1078_RS04415 - DUF3127 domain-containing protein, at 113,644 to 114,039 _RS04415 HMPREF1078_RS04420: HMPREF1078_RS04420 - RelA/SpoT family protein, at 114,134 to 116,428 _RS04420 HMPREF1078_RS04425: HMPREF1078_RS04425 - lytic transglycosylase domain-containing protein, at 116,514 to 118,064 _RS04425
Locus Name Description Strand Phenotype
HMPREF1078_RS04375 HMPREF1078_RS04375 hypothetical protein - cofit
HMPREF1078_RS20090 HMPREF1078_RS20090 response regulator + insig.
HMPREF1078_RS04385 HMPREF1078_RS04385 HU family DNA-binding protein + cofit
HMPREF1078_RS04390 HMPREF1078_RS04390 tRNA-Pro - insig.
HMPREF1078_RS04395 HMPREF1078_RS04395 3-dehydroquinate synthase - cofit
HMPREF1078_RS04400 HMPREF1078_RS04400 alanine--tRNA ligase - no data
HMPREF1078_RS04405 HMPREF1078_RS04405 M23 family metallopeptidase + strong
HMPREF1078_RS04410 HMPREF1078_RS04410 MerR family transcriptional regulator + no data
HMPREF1078_RS04415 HMPREF1078_RS04415 DUF3127 domain-containing protein + strong
HMPREF1078_RS04420 HMPREF1078_RS04420 RelA/SpoT family protein - strong
HMPREF1078_RS04425 HMPREF1078_RS04425 lytic transglycosylase domain-containing protein - insig.

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