Gene info for HMPREF1078_RS04385 in Parabacteroides merdae CL09T00C40

Annotation: HU family DNA-binding protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, + strand, nucleotides 107,777 to 108,070
See nucleotide sequence around HMPREF1078_RS04385 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS04360 and HMPREF1078_RS04365 are separated by 1 nucleotidesHMPREF1078_RS04365 and HMPREF1078_RS04370 are separated by 152 nucleotidesHMPREF1078_RS04370 and HMPREF1078_RS04375 are separated by 87 nucleotidesHMPREF1078_RS04375 and HMPREF1078_RS20090 are separated by 288 nucleotidesHMPREF1078_RS20090 and HMPREF1078_RS04385 are separated by 285 nucleotidesHMPREF1078_RS04385 and HMPREF1078_RS04390 are separated by 59 nucleotidesHMPREF1078_RS04390 and HMPREF1078_RS04395 are separated by 36 nucleotidesHMPREF1078_RS04395 and HMPREF1078_RS04400 are separated by 170 nucleotidesHMPREF1078_RS04400 and HMPREF1078_RS04405 are separated by 97 nucleotidesHMPREF1078_RS04405 and HMPREF1078_RS04410 are separated by 15 nucleotides HMPREF1078_RS04360: HMPREF1078_RS04360 - sigma-70 family RNA polymerase sigma factor, at 103,597 to 104,154 _RS04360 HMPREF1078_RS04365: HMPREF1078_RS04365 - hypothetical protein, at 104,156 to 104,515 _RS04365 HMPREF1078_RS04370: HMPREF1078_RS04370 - 30S ribosomal protein S1, at 104,668 to 106,461 _RS04370 HMPREF1078_RS04375: HMPREF1078_RS04375 - hypothetical protein, at 106,549 to 106,812 _RS04375 HMPREF1078_RS20090: HMPREF1078_RS20090 - response regulator, at 107,101 to 107,491 _RS20090 HMPREF1078_RS04385: HMPREF1078_RS04385 - HU family DNA-binding protein, at 107,777 to 108,070 _RS04385 HMPREF1078_RS04390: HMPREF1078_RS04390 - tRNA-Pro, at 108,130 to 108,204 _RS04390 HMPREF1078_RS04395: HMPREF1078_RS04395 - 3-dehydroquinate synthase, at 108,241 to 109,305 _RS04395 HMPREF1078_RS04400: HMPREF1078_RS04400 - alanine--tRNA ligase, at 109,476 to 112,103 _RS04400 HMPREF1078_RS04405: HMPREF1078_RS04405 - M23 family metallopeptidase, at 112,201 to 113,184 _RS04405 HMPREF1078_RS04410: HMPREF1078_RS04410 - MerR family transcriptional regulator, at 113,200 to 113,556 _RS04410
Locus Name Description Strand Phenotype
HMPREF1078_RS04360 HMPREF1078_RS04360 sigma-70 family RNA polymerase sigma factor + insig.
HMPREF1078_RS04365 HMPREF1078_RS04365 hypothetical protein + strong
HMPREF1078_RS04370 HMPREF1078_RS04370 30S ribosomal protein S1 + insig.
HMPREF1078_RS04375 HMPREF1078_RS04375 hypothetical protein - cofit
HMPREF1078_RS20090 HMPREF1078_RS20090 response regulator + insig.
HMPREF1078_RS04385 HMPREF1078_RS04385 HU family DNA-binding protein + cofit
HMPREF1078_RS04390 HMPREF1078_RS04390 tRNA-Pro - insig.
HMPREF1078_RS04395 HMPREF1078_RS04395 3-dehydroquinate synthase - cofit
HMPREF1078_RS04400 HMPREF1078_RS04400 alanine--tRNA ligase - no data
HMPREF1078_RS04405 HMPREF1078_RS04405 M23 family metallopeptidase + strong
HMPREF1078_RS04410 HMPREF1078_RS04410 MerR family transcriptional regulator + no data

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