Gene info for HMPREF1078_RS04055 in Parabacteroides merdae CL09T00C40

Annotation: DUF4466 family protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976525, - strand, nucleotides 20,998 to 21,990
See nucleotide sequence around HMPREF1078_RS04055 or for all of scaffold NZ_JH976525

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS04030 and HMPREF1078_RS04035 overlap by 4 nucleotidesHMPREF1078_RS04035 and HMPREF1078_RS04040 are separated by 16 nucleotidesHMPREF1078_RS04040 and HMPREF1078_RS04045 are separated by 147 nucleotidesHMPREF1078_RS04045 and HMPREF1078_RS04050 are separated by 7 nucleotidesHMPREF1078_RS04050 and HMPREF1078_RS04055 are separated by 115 nucleotidesHMPREF1078_RS04055 and HMPREF1078_RS04060 are separated by 15 nucleotidesHMPREF1078_RS04060 and HMPREF1078_RS04065 are separated by 17 nucleotidesHMPREF1078_RS04065 and HMPREF1078_RS04070 are separated by 11 nucleotidesHMPREF1078_RS04070 and HMPREF1078_RS04075 are separated by 156 nucleotidesHMPREF1078_RS04075 and HMPREF1078_RS04080 are separated by 180 nucleotides HMPREF1078_RS04030: HMPREF1078_RS04030 - glycoside hydrolase family 88 protein, at 9,827 to 11,032 _RS04030 HMPREF1078_RS04035: HMPREF1078_RS04035 - heparinase II/III family protein, at 11,029 to 12,888 _RS04035 HMPREF1078_RS04040: HMPREF1078_RS04040 - polysaccharide lyase family 8 super-sandwich domain-containing protein, at 12,905 to 15,988 _RS04040 HMPREF1078_RS04045: HMPREF1078_RS04045 - heparinase II/III family protein, at 16,136 to 18,793 _RS04045 HMPREF1078_RS04050: HMPREF1078_RS04050 - alginate lyase family protein, at 18,801 to 20,882 _RS04050 HMPREF1078_RS04055: HMPREF1078_RS04055 - DUF4466 family protein, at 20,998 to 21,990 _RS04055 HMPREF1078_RS04060: HMPREF1078_RS04060 - hypothetical protein, at 22,006 to 22,509 _RS04060 HMPREF1078_RS04065: HMPREF1078_RS04065 - RagB/SusD family nutrient uptake outer membrane protein, at 22,527 to 24,416 _RS04065 HMPREF1078_RS04070: HMPREF1078_RS04070 - TonB-dependent receptor, at 24,428 to 27,835 _RS04070 HMPREF1078_RS04075: HMPREF1078_RS04075 - DUF4974 domain-containing protein, at 27,992 to 29,050 _RS04075 HMPREF1078_RS04080: HMPREF1078_RS04080 - RNA polymerase sigma-70 factor, at 29,231 to 29,785 _RS04080
Locus Name Description Strand Phenotype
HMPREF1078_RS04030 HMPREF1078_RS04030 glycoside hydrolase family 88 protein - insig.
HMPREF1078_RS04035 HMPREF1078_RS04035 heparinase II/III family protein - insig.
HMPREF1078_RS04040 HMPREF1078_RS04040 polysaccharide lyase family 8 super-sandwich domain-containing protein - insig.
HMPREF1078_RS04045 HMPREF1078_RS04045 heparinase II/III family protein - insig.
HMPREF1078_RS04050 HMPREF1078_RS04050 alginate lyase family protein - insig.
HMPREF1078_RS04055 HMPREF1078_RS04055 DUF4466 family protein - insig.
HMPREF1078_RS04060 HMPREF1078_RS04060 hypothetical protein - cofit
HMPREF1078_RS04065 HMPREF1078_RS04065 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS04070 HMPREF1078_RS04070 TonB-dependent receptor - insig.
HMPREF1078_RS04075 HMPREF1078_RS04075 DUF4974 domain-containing protein - insig.
HMPREF1078_RS04080 HMPREF1078_RS04080 RNA polymerase sigma-70 factor + insig.

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