Gene info for HMPREF1078_RS03500 in Parabacteroides merdae CL09T00C40

Annotation: carboxymuconolactone decarboxylase family protein
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH976524, + strand, nucleotides 825,750 to 827,425
See nucleotide sequence around HMPREF1078_RS03500 or for all of scaffold NZ_JH976524

Nearby Genes

500 ntHMPREF1078_RS03475 and HMPREF1078_RS03480 overlap by 10 nucleotidesHMPREF1078_RS03480 and HMPREF1078_RS03485 are separated by 21 nucleotidesHMPREF1078_RS03485 and HMPREF1078_RS03490 are separated by 139 nucleotidesHMPREF1078_RS03490 and HMPREF1078_RS03495 are separated by 170 nucleotidesHMPREF1078_RS03495 and HMPREF1078_RS03500 are separated by 112 nucleotidesHMPREF1078_RS03500 and HMPREF1078_RS03510 are separated by 89 nucleotidesHMPREF1078_RS03510 and HMPREF1078_RS20055 are separated by 4 nucleotidesHMPREF1078_RS20055 and HMPREF1078_RS03515 are separated by 54 nucleotidesHMPREF1078_RS03515 and HMPREF1078_RS03520 are separated by 17 nucleotidesHMPREF1078_RS03520 and HMPREF1078_RS03525 are separated by 154 nucleotides HMPREF1078_RS03475: HMPREF1078_RS03475 - thiamine phosphate synthase, at 820,869 to 821,468 _RS03475 HMPREF1078_RS03480: HMPREF1078_RS03480 - thiamine phosphate synthase, at 821,459 to 822,196 _RS03480 HMPREF1078_RS03485: HMPREF1078_RS03485 - phosphomethylpyrimidine synthase ThiC, at 822,218 to 823,924 _RS03485 HMPREF1078_RS03490: HMPREF1078_RS03490 - response regulator transcription factor, at 824,064 to 824,963 _RS03490 HMPREF1078_RS03495: HMPREF1078_RS03495 - hypothetical protein, at 825,134 to 825,637 _RS03495 HMPREF1078_RS03500: HMPREF1078_RS03500 - carboxymuconolactone decarboxylase family protein, at 825,750 to 827,425 _RS03500 HMPREF1078_RS03510: HMPREF1078_RS03510 - cupin domain-containing protein, at 827,515 to 828,006 _RS03510 HMPREF1078_RS20055: HMPREF1078_RS20055 - hypothetical protein, at 828,011 to 828,142 _RS20055 HMPREF1078_RS03515: HMPREF1078_RS03515 - response regulator transcription factor, at 828,197 to 829,027 _RS03515 HMPREF1078_RS03520: HMPREF1078_RS03520 - AraC family transcriptional regulator, at 829,045 to 829,941 _RS03520 HMPREF1078_RS03525: HMPREF1078_RS03525 - antibiotic biosynthesis monooxygenase, at 830,096 to 830,590 _RS03525
Locus Name Description Strand Phenotype
HMPREF1078_RS03475 HMPREF1078_RS03475 thiamine phosphate synthase + strong
HMPREF1078_RS03480 HMPREF1078_RS03480 thiamine phosphate synthase + insig.
HMPREF1078_RS03485 HMPREF1078_RS03485 phosphomethylpyrimidine synthase ThiC + strong
HMPREF1078_RS03490 HMPREF1078_RS03490 response regulator transcription factor - insig.
HMPREF1078_RS03495 HMPREF1078_RS03495 hypothetical protein + insig.
HMPREF1078_RS03500 HMPREF1078_RS03500 carboxymuconolactone decarboxylase family protein + insig.
HMPREF1078_RS03510 HMPREF1078_RS03510 cupin domain-containing protein + insig.
HMPREF1078_RS20055 HMPREF1078_RS20055 hypothetical protein + insig.
HMPREF1078_RS03515 HMPREF1078_RS03515 response regulator transcription factor - insig.
HMPREF1078_RS03520 HMPREF1078_RS03520 AraC family transcriptional regulator - insig.
HMPREF1078_RS03525 HMPREF1078_RS03525 antibiotic biosynthesis monooxygenase + insig.

Or browse nearby genes